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current user: public |
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Query: [O] COG3175 Cytochrome oxidase assembly factor, from VFDB |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 | |||||||
# | Score | Template | Links and tools | %id | First | MTQTPASPDPTDDARAAERGLNRAMLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDGGALRNTQVDQARTVTVEFDSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVNKEGRSVSAQAIPSYAPKQATEFFKKIECFCFKQQTLAGNESREMPVVFVIDPDLPKDVKTITLSYTFFEIGKPVAQTPTVPGKGT | Last |
1 | -106.000 | [O] COG3175 Cytochrome oxidase assembly factor | ali | 100 | 1 | MTQTPASPDPTDDARAAERGLNRAMLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDGGALRNTQVDQARTVTVEFDSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVNKEGRSVSAQAIPSYAPKQATEFFKKIECFCFKQQTLAGNESREMPVVFVIDPDLPKDVKTITLSYTFFEIGKPVAQTPTVPGKGT | 202 |
2 | -79.300 | [O] KOG2540 Cytochrome oxidase assembly factor COX11 | ali follow.. | 29 | 268 | .QQFWRMKSTDSPEDAARKLRAKSTLYYITAGGVLIVGLSYAAVPLYSIFCQAYSYGGTTTQGHDAEKVEHMKKIEDRVLKIRFDIGSSMRWNFKPQQYEIKVAPGETALAFYTARNPTDKPVIGISTYNVIPFEAGAYFNKIQCFCFEEQQLNPHEEVDMPVFFYIDPEITADCDTITLSYTFFEAKEGLKLNFPSYAKPH | 475 |
3 | -9.360 | [U] KOG1631 Translocon-associated complex TRAP, alpha subunit | ali follow.. | 7 | 2 | .......................RHLMFLMLMVLPIVICTFSAPNKFGAYAAEAVEDDLVDVEGEEGAVTGEDAEADEDSDTGSSSSPNADTYLLTPGQQLDLPGGKPVEFLIGFTNKGAEEFVIETVEA-YPMDFNYFIQNFSAVAY-NREVKPGFESTVSYTFLPSDQFAGRPFGLNIALAYRDANGI............ | 175 |
4 | -8.780 | [U] KOG3317 Translocon-associated complex TRAP, beta subunit | ali follow.. | 9 | 5 | ...................HRESGCLLRLLLSCTEILDKEIPKLQMFKHLLTLFALCAVFSTCLSEDETRA-------RLLVSKQILNK------------YLVEKSDLLVRYTIFNVGSGAATKVRLVDSGFHPEA--FDVVG---AVVDRIAPQTNFTHVLVVRPKAFGYFNFTAAEVSYKAVEESETLQLAVSSE.... | 163 |
5 | -8.430 | [P] COG4454 Uncharacterized copper-binding protein | ali follow.. | 14 | 1 | ...................................MTRLKLALLLTALATPAFAGGTHSGGDNVMAIGEPGDKSKVTQTIQVTMKETPDGKMMFTP--AKFEFKKGKT--VRFAVKNVGELDILDEQKANLEHKAVMAKAPEMEHDNPNAISLAPGESGEI......................................... | 125 |
6 | -8.250 | [E] COG0832 Urea amidohydrolase (urease) beta subunit | ali follow.. | 12 | 2 | .........................................................................................IPGEIIAAAGEIELNAGLE-TVSIEVANSGDRPVQVGSHYHFAETNPGLIFDRDAARGKTAVRFEPGQTRQVTLIPLSGKREVFGFRQQV....................... | 97 |
7 | -7.950 | [S] COG4719 Uncharacterized protein conserved in bacteria | ali follow.. | 13 | 1 | ..........................................MFP-THLTLTALALTSVSFAAQAAPAATSPIKLSGATYSVAQVTENGKTTERLVDASGKGALPGSLLQMTQKVQNVSARSVNGLRLNMRVDPATI................................................................. | 100 |
8 | -7.330 | [S] COG1470 Predicted membrane protein | ali follow.. | 8 | 580 | ..........................................................................GIKKEIPVKIKLIGSYNMNVNLLNYRLTITAGEEKTAMMDIFNFGNAPLTNLKITVKGPQGWDVKVDPSQI-----PSLSPKGRERVTITVKVPEGTPAGDYRVQITVKADQAEWQDTLRVVVRQRST | 702 |
9 | -6.730 | [T] KOG3900 Transforming growth factor beta, bone morphogenetic protein and related proteins | ali follow.. | 11 | 280 | ..........................................................EKRQAKHKQRKRLKSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKA------C-C------VPTELSAISMLYLDENEVLKNYQDMVVE..................... | 391 |
10 | -6.530 | [M] COG1361 S-layer domain | ali follow.. | 13 | 709 | ..............................................FKVDVDENAKSGRYLIPLTIEYKDPTGKFRQIEVNIPVIIAEKPKLVITDVRFGEKPVQGKDVNIYITVKNVGGEQAESVVI-PFTLVKRTDYIGT----------LNPNQTGEGVITLSIEKDAVPKVYNILIRMRAVGDKEKGDDNVYVFEG.. | 859 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |