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Query: [R] COG3180 Putative ammonia monooxygenase, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKPEQPSTPMLPKNGGLGRLSAVWQWCLLALLSAVFAGVLEMIGIPAGLLMGPMIAGALVGMNGGTIRLPRQLFFCVQVVLAMMIAASMSPDLLVTFSGNWLLFLAIILSVIGVSTLCGWTITRMGILPGTTAIWGSSAGAASTMLLMADAYGADARLVAFMQYLRVVFVASTATIVSHLWVSGVEAETATHWFAPIAGLPFFMTLAVGIASGILGKILRVPAGAFLVPFAIGSALNITGTLTIELPQWLLALSFAMLGWNIGLGFTRAILAHARRALMPTIVSIVVLISFSGLLALLLIKVAGIDPLTAYLATSPGGLDSIAVIAASSNVDLPFVMALQTARLLIITLIGPALARFVADRALast
1 -100.000[R] COG3180 Putative ammonia monooxygenase  ali  100  1MKPEQPSTPMLPKNGGLGRLSAVWQWCLLALLSAVFAGVLEMIGIPAGLLMGPMIAGALVGMNGGTIRLPRQLFFCVQVVLAMMIAASMSPDLLVTFSGNWLLFLAIILSVIGVSTLCGWTITRMGILPGTTAIWGSSAGAASTMLLMADAYGADARLVAFMQYLRVVFVASTATIVSHLWVSGVEAETATHWFAPIAGLPFFMTLAVGIASGILGKILRVPAGAFLVPFAIGSALNITGTLTIELPQWLLALSFAMLGWNIGLGFTRAILAHARRALMPTIVSIVVLISFSGLLALLLIKVAGIDPLTAYLATSPGGLDSIAVIAASSNVDLPFVMALQTARLLIITLIGPALARFVADRA 362
2 -14.700[P] KOG3826 Na+/H+ antiporter  ali follow..  10  46LNPLADHVNPVNATNEDVTVRSIFVIFILLVAGIFAAKISKALRLPP--LFGCLALGIIIKNITVPPFVETMIRKVALVMIIVRWGLATDIHFLYENAL--MPVTIGLVTAIGEIIAVTIASYFILNISFVMSIFTVSPAVTVPANILAICCVDNLFCVILFMVLSSIAGSIVFGCIGGIVLGWILWRFPRSDAPHTQFARITLLGTICIAVVIGTYLIKYSCSGFLAALITSAMSEKLECVESTYKYIWDSFALPLLFICLGMKFDCSTLTW--EIVFLCIAVIAIGLLVRTILVMLVTLSSHINFKEQILSLLPRATFQADLAPTLLLMATALILKAAILSVLITAPIFDILLNLVGSK. 465
3 -12.100[R] COG0385 Predicted Na+-dependent transporter  ali follow..  10  1..........................................MRFLPDKFTTMLIATILFASVGEFAVWFALATKIAVGLLFFLHGARLSREAVIAGITHWKLHVTVLASTFVLFPILGLAAGWASPFYTGILYLCVLPSTVQSSIAFTSMARGNVSAAVVSASASNIFGMFLTPLLVGLLFAIKGGG--------GISMDALESILLQLL---------AP--FVLGQVLQPFIGNFVRRKARVLAVVDRGSILMVVYLAFSEAIVEGLWRTVSDDLGMMVGVNILLLAVVLLATWYGSKWLGFSRPDRITIMFCGSKKSLAS-GANVGNIVLPLMLFHQIQLMACAIIARKLAERHEIR. 320
4 -11.700[P] COG0475 Kef-type K+ transport systems, membrane components  ali follow..  15  6......................LINVIILLGTAVFIVAILKRFRLSP--VLGYLIAGAAIGDHGLKIVTYDQTKLLGE--LGVAIGLELSFERLKAMRR---YVFGLGSLQVLTTAIVIAGAMVLIDGNSSAAIITGGGLALSSTALVMQVIGRISLAILLLQDLAVVPLLVIVPLLASNNKASLAVA-ISSESNNTSELPISMTLLIVLSAAWATETFGLSLA--LGAFVAGVLVAETEFRL-PFKSLFLGLFFMTVGMNIDALE-------MYEKISHILTLSIALICIKTLIITAFCILFGFNKGVAFLLLSQGGEFGFILFSLGKDSGVLEESTADIL-VTFTMALTPLLAAL..... 378
5 -11.600[P] KOG2718 Na+-bile acid cotransporter  ali follow..  13  126........................................................................WTIVGLTITMLGMGMTLTLDDLRGALSMPKELFAGFLLQYSVMPLSAFFVSKLLNLPPHYALVGCCPGGTAS--IVTYIARGNVALSVLMTAASTVSAVIMTPLLTAKLAKQ---------YITVDALGLLMSTLQVVL---------LPV--LAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILCGYAIGQNAS-----AILMSGKQVVLASCLLHISGFLFGYLFSRILGIDVASSRTISIEVGMQNLGVVLATQHFGNPLTAVPCAVSSVCHSILGSVLAGIWRRSA 395
6 -11.200[R] KOG4821 Predicted Na+-dependent cotransporter  ali follow..  9  24................................................WFFICLAILIVIARFGGLIKGQYSIGYGCVAWIFLQSGLGMKSRSLMANMLNWRAHATILVLSFLITSSIVYGFCCADWVLIGLILTATCPTTVASNVIMTTNAGGNSLLCVCEVFIGNLLGAFITPALVQMFTNRAPFAYGNPATGNGIGALYGRVMK-------VGLSVFVP--LFVGQVIQNCFPKGTAYYLGFLKKYHIKIGSYMLLLIMFSSFSTAFYQDAFTSVSHVCIIFLCFFNLGIYIFFTGTAALGVSLITSQYGDKKEHLGKLLV-----------LVLYQVEQVMTANFFVSLFKRWIQKDA 391
7 -10.900[P] KOG4505 Na+/H+ antiporter  ali follow..  10  20..........................GFTSLFMLCSLIIKEKLFLGEATMTGLIFGPYVAKLFVPTGNTDYITEELARVLLVVEVGAELPRAYMLRHWRSMFVMLLPVMIFGWLVSTGFMYA--IPRLSFLESLAIAACITATDPVLASSIVGKGKFARRVPGHLRNMLAIPFLYLAIYLIIEKPARHAGRDWVCIIILYECTFGCVLGAIIGVIARKM-IGVDDLLVSFCAGAAFSWDSWFSKKIDLLLNLSFFVYVGAIM-PQFHMPHMDLSVWRLVVLAICILIARRIPAVLLFKSFVPDIINWREALFAGHFGGVGALYTCLVARAEIPNWYCIQVMWPVVCFLVLSSIIVH...... 427
8 -10.300[P] COG4651 Kef-type K+ transport system, predicted NAD-binding component  ali follow..  13  8......................ITTIVGGLVLAFILGMLANKLRISP--LVGYLLAGVLAGPFTPGF---PELAELGVILLMFGVGLHFSLKDLMAVKA---IAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATSAATGSRELFTLSVLALALGIAFGAVELFDVSFA--LGAFFAGMVLNESELSH-PLRDAFAVLFFVSVGMLFDPLI-------LIQQPLAVLATLAIILFGKSLAAFFLVRLFGHSQRTALASLAQIGEFAFILAGLGMALNLLPQAGQNLV-AILSIMLNPVLFALLEK.. 389
9 -9.700[E] COG0786 Na+/glutamate symporter  ali follow..  12  10......................LESFLIAISVLFLGHFINAKLPIPEPIVGG-ACVITALHFHGIDMEFSLPLQNVFMLMFFSTVGLAANYTQLIKGGAKVFLFLAVASVFIIIQNGVGVSLAAGLGLDPLLGLIAGS-GGHGTGAAWANTFAENLEIAMASATFGLIIGGIIGSPVAQKLVDKHGIESEYGRGTQTHIEILFILLICVTGAKYLEAWVKIPDYALFIGVFITNLLEVTKLRKVDAET-VDILGTVSLSLFLAMALMSLKLWNIFDLALPFLVILAIQSVVLGVFCYFVTKVMGANYDAAVLGATPTAVMNMGSVVKRFGPSPQAFMVVPIVGAFFIDIVNLIILQGYIS.. 405
10 -8.300[S] COG5505 Predicted integral membrane protein  ali follow..  12  14.........................WGFIAVWAAVSIGLEQRFKW-VSGAIIALAGAMVFTNVGVLPVESPVYDTVWSYVVPLAIPLLLFQINVRQIFKLLFIFLISSVGTVLGSILAFFLLKQHIPDKIGGMISASYIGGGVNFAAMAAKFETPGEYVSATVVADNFMMALLFFILISIDGNSGNSAESYWKRKDISLKDIAFNAGAAFALVAVSMKVGDQYLVLTSLTVLIIFLFPRFFERLNGSQELGTFLIYLFFVVIGIP---ADLRLIVTNAPLILLFVFIIAISNLAVSLAAGKLFRVRLEEILLAVNAGGPTTAAAMAIAKG................................ 362
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.