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Query: [R] COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTKLTLEVANSIINRACSTASGKGLKPLSVAVLDAGGHLVAFQKQDGASMLRFEIAFGKAYGALAVGFGSRWLDKASADRPHFVAGLTSISGGKIVPVPGGVLVRDQAGRLLGAVGITGDTSDNDEAVAVEAIEIGGLNAQAALast
1 -77.600[R] COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol  ali  100  1MTKLTLEVANSIINRACSTASGKGLKPLSVAVLDAGGHLVAFQKQDGASMLRFEIAFGKAYGALAVGFGSRWLDKASADRPHFVAGLTSISGGKIVPVPGGVLVRDQAGRLLGAVGITGDTSDNDEAVAVEAIEIGGLNAQAA 143
2 -50.300[S] COG4702 Uncharacterized conserved protein  ali follow..  14  19FERFDLDTAWKLGATLRRMAGERKL-GCVIDITL-YSMQVFYAALDGATPDNPNWVRRKRNTVFRLFKSSYATGLSLLKQQTNLQAKLGLPDAEFAAHGGSFPIVVKGTGCIGAVTVSGLPQREDHNLVVEALAEL....... 152
3 -6.860[KT] COG3835 Sugar diacid utilization regulator  ali follow..  19  3...LDSQLAQQIVDRTMAIIGY------NINVMNQAGVIIG-----SGEKNRIGQVHDGAILALKHGDSVELTAESCVALKGVKPGIN--------------MVLRNQQQVVGIVGITGEPKDIRDNLVKMSAEMI....... 112
4 -6.420[K] COG4465 Pleiotropic transcriptional repressor  ali follow..  11  4.....LQKTRIINSMLQAAAKPVNFKEMAIFVVSRRGKLLGYSINQQIENDRMKLEDRQFPEEYTKNLFNVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILQDQFNDDDLILAEYGATVVGMEI... 154
5 -6.200[T] COG1956 GAF domain-containing protein  ali follow..  13  20....GETNFIATLANASALLYERGLNWAGFYLVDGKQLVLGPFQ---GKIACVRIPVGKGVCGTAVAENRVQRVGNVHAFPGHIACDAASNA---------VLPITVKGKVIGILDIDSIVDEDDELGLISVVAGLCEHLEFC 154
6 -5.820[TK] COG4936 Predicted sensor domain  ali follow..  16  7...LNSELINKIAQDFAQATG------LAVVVVNIHGDEIS--------------LFNFTPFCQLMRQHPQHSTRCRMSDRCGGLEASKSDQPCIYRCHAGSIPLVIAGHLVGFV-LCGQLSNDVELVNILNVDDRWQADP.. 130
7 -5.530[S] COG3798 Uncharacterized protein conserved in bacteria  ali follow..  12  53.................................................................................................IKERHEVVGSDGGHVGRV--DLGGGLKHHLIPLSWVEYID...... 103
8 -5.430[K] COG4109 Predicted transcriptional regulator containing CBS domains  ali follow..  9  199.ETTAYLSTSDKVEDWHKMEEATGHS--RFPVVNRAMRLTGMVTLEKNPSISIERVMTKNPLTVGPKMSVASVAHMMIWES------------------EVIPVVKDDLTLIGIV............................ 297
9 -5.330[OU] COG0616 Periplasmic serine proteases (ClpP class)  ali follow..  17  349........GDTTASQIRDARLDPKVKAIVLRVNSPGGSVNA------SEVIRAELAAARA-----------------AGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGVHS........ 452
10 -5.120[S] COG4048 Uncharacterized protein conserved in archaea  ali follow..  18  5.................SSSTGEELRELGICIHELVSRLPLTIR---------------SRESPGLRIEDGKVVDDNYTGPVLEKVLESGEIARETPDRGGIPVLKEEGEVICAVGI.......................... 96
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.