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Query: [S] COG3216 Uncharacterized protein conserved in bacteria, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGKRVLFRRRNPDGLFERLRIYMWPRRSFSRSFQYVSKRILRLNATPTAVAAGVAAGVFASFFPLGSHFAIAAIVCWLISGNMVAAGLGTFVFGNPLTLPFVVGATWETGKIMLHGHMQSDERPAHLSEMLQTLSISQLWAPVLKPMLCGAVPLGLVFGLLFYGITRCGMTAFREKRRKRLAEKGSLLQQQEDIVLSPPLPTRHRRAGGLast
1 -102.000[S] COG3216 Uncharacterized protein conserved in bacteria  ali  100  1MGKRVLFRRRNPDGLFERLRIYMWPRRSFSRSFQYVSKRILRLNATPTAVAAGVAAGVFASFFPLGSHFAIAAIVCWLISGNMVAAGLGTFVFGNPLTLPFVVGATWETGKIMLHGHMQSDERPAHLSEMLQTLSISQLWAPVLKPMLCGAVPLGLVFGLLFYGITRCGMTAFREKRRKRLAEKGSLLQQQEDIVLSPPLPTRHRRAGG 209
2 -10.500[R] KOG4821 Predicted Na+-dependent cotransporter  ali follow..  13  112.............................................NDPKIDDWVLIGLLTATCP----TVASNVIMTTNAGGNSLLCVCEVFIGNAFITPALVQMFTNRAPFAYGNPATGNGIGALYGRV-----MKQVGLSVFVPLFVGQVI........................................................ 215
3 -10.200[P] KOG1558 Fe2+/Zn2+ regulated transporter  ali follow..  11  203.......................................VLEIGIVVHSVIIGISLGA--------SIDTIKPLMAALSFHQFFEGLGLGGCISLTVLMATFFSVTAPLGIGI-----------------LGMSSGLGYRKESKEAIMVEGMLNAASAGILIYMSLVDLLATDFMNPRLQSNLWLH....................... 334
4 -9.490[S] COG3597 Uncharacterized protein/domain associated with GTPases  ali follow..  11  2.............................................CKTIIHVASGAAGVAGLIPIPFSDALAIAPIQAGMIYKM-NDAFGMDLDKSVGASLVAGLLGVTAVAQVGRTLVNGFLKFI---------------------VVGSVAGGATAAVITEGIGFAYLKVLEKCFNDETGEVNLPGEVGMITSLFKENYLNLDTI.. 142
5 -9.200[R] COG0385 Predicted Na+-dependent transporter  ali follow..  13  92.................................................SQSPFYTGIYLCVLP----TVQSSIAFTSMARGNVSAAVVSASASN---IFGMFLTPLLVGLLFAIKGGGGISMDA----------LESILLQLLAPFVLGQVL........................................................ 180
6 -8.690[S] COG5197 Predicted membrane protein  ali follow..  155.............................................................YMPIMGLVTYILIWNTQQLKGSFNPEDLYYKLSSTLAFVCLDLLILKLGLYLLIDSKIPSFSLVELLCYVGYKFVPLILAQLLTNVTMPFNLNILIKFYLFIAFGVFLLRSVKFNLLSRSGAEDDDIHVSISKSTVKK.......... 293
7 -8.640[D] COG0239 Integral membrane protein possibly involved in chromosome condensation  ali follow..  11  6.................................................VGIFGALGGMCRYFPSATLAVNLI--------GCFLLAFIMPFLAEKSRISLVLLNGIGTG--FIGAFTTFSAFSVDTIELLQQGEVVLAIS-----YILVSLIGGLVMVKFGRRFSNKLLRRGAHH................................. 127
8 -8.620[O] COG2370 Hydrogenase/urease accessory protein  ali follow..  10  1.....MAGSPRSRCERQQFQEGIMLKRLSLAAAALGLTTLPAFAHLNPEEHGSFMAGVS----PFFGADHILAMVAVGIWASQVGTMAVGFLMA-PFVEPAILASVIGLGLLVAMAARLPTAAAAAVVGAFALFHGHAHGGELALQFGIGFMIATAILHLAGIALGLGIARF..................................... 191
9 -8.590[S] KOG4474 Uncharacterized conserved protein  ali follow..  120................................................RNLVLMMTGYLLRIVELLFHHVVVLSAFTICLFYDLMLGIVVAGLLMELNSIFLNIITLVVFRLIVN----------VYMIYFVFASFSMSPWYIASTICVLILCLASSNMVLTYRLLAADGFCGASRQRQVPARVETEVPPEHQNLVKQVVQGSDQNDG. 306
10 -8.580[R] COG3030 Protein affecting phage T7 exclusion by the F plasmid  ali follow..  5.....................................................................PFIAIFLYVYIEISIFIQVAHVL--GVLLTLVLVIFTSVIGMSLVRNQGFKNFVLMQQKMAAGENPAAEMIKSVS--LIIAGLLLGFFTDFLGLLLLLPPVQKHLTVKLMPHLRFSRMPGGGFSAGTGGGNTFDGE.... 139

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.