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current user: public |
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Query: [S] COG3216 Uncharacterized protein conserved in bacteria, from VFDB |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . | |||||||
# | Score | Template | Links and tools | %id | First | MGKRVLFRRRNPDGLFERLRIYMWPRRSFSRSFQYVSKRILRLNATPTAVAAGVAAGVFASFFPLGSHFAIAAIVCWLISGNMVAAGLGTFVFGNPLTLPFVVGATWETGKIMLHGHMQSDERPAHLSEMLQTLSISQLWAPVLKPMLCGAVPLGLVFGLLFYGITRCGMTAFREKRRKRLAEKGSLLQQQEDIVLSPPLPTRHRRAGG | Last |
1 | -102.000 | [S] COG3216 Uncharacterized protein conserved in bacteria | ali | 100 | 1 | MGKRVLFRRRNPDGLFERLRIYMWPRRSFSRSFQYVSKRILRLNATPTAVAAGVAAGVFASFFPLGSHFAIAAIVCWLISGNMVAAGLGTFVFGNPLTLPFVVGATWETGKIMLHGHMQSDERPAHLSEMLQTLSISQLWAPVLKPMLCGAVPLGLVFGLLFYGITRCGMTAFREKRRKRLAEKGSLLQQQEDIVLSPPLPTRHRRAGG | 209 |
2 | -10.500 | [R] KOG4821 Predicted Na+-dependent cotransporter | ali follow.. | 13 | 112 | .............................................NDPKIDDWVLIGLLTATCP----TVASNVIMTTNAGGNSLLCVCEVFIGNAFITPALVQMFTNRAPFAYGNPATGNGIGALYGRV-----MKQVGLSVFVPLFVGQVI........................................................ | 215 |
3 | -10.200 | [P] KOG1558 Fe2+/Zn2+ regulated transporter | ali follow.. | 11 | 203 | .......................................VLEIGIVVHSVIIGISLGA--------SIDTIKPLMAALSFHQFFEGLGLGGCISLTVLMATFFSVTAPLGIGI-----------------LGMSSGLGYRKESKEAIMVEGMLNAASAGILIYMSLVDLLATDFMNPRLQSNLWLH....................... | 334 |
4 | -9.490 | [S] COG3597 Uncharacterized protein/domain associated with GTPases | ali follow.. | 11 | 2 | .............................................CKTIIHVASGAAGVAGLIPIPFSDALAIAPIQAGMIYKM-NDAFGMDLDKSVGASLVAGLLGVTAVAQVGRTLVNGFLKFI---------------------VVGSVAGGATAAVITEGIGFAYLKVLEKCFNDETGEVNLPGEVGMITSLFKENYLNLDTI.. | 142 |
5 | -9.200 | [R] COG0385 Predicted Na+-dependent transporter | ali follow.. | 13 | 92 | .................................................SQSPFYTGIYLCVLP----TVQSSIAFTSMARGNVSAAVVSASASN---IFGMFLTPLLVGLLFAIKGGGGISMDA----------LESILLQLLAPFVLGQVL........................................................ | 180 |
6 | -8.690 | [S] COG5197 Predicted membrane protein | ali follow.. | 8 | 155 | .............................................................YMPIMGLVTYILIWNTQQLKGSFNPEDLYYKLSSTLAFVCLDLLILKLGLYLLIDSKIPSFSLVELLCYVGYKFVPLILAQLLTNVTMPFNLNILIKFYLFIAFGVFLLRSVKFNLLSRSGAEDDDIHVSISKSTVKK.......... | 293 |
7 | -8.640 | [D] COG0239 Integral membrane protein possibly involved in chromosome condensation | ali follow.. | 11 | 6 | .................................................VGIFGALGGMCRYFPSATLAVNLI--------GCFLLAFIMPFLAEKSRISLVLLNGIGTG--FIGAFTTFSAFSVDTIELLQQGEVVLAIS-----YILVSLIGGLVMVKFGRRFSNKLLRRGAHH................................. | 127 |
8 | -8.620 | [O] COG2370 Hydrogenase/urease accessory protein | ali follow.. | 10 | 1 | .....MAGSPRSRCERQQFQEGIMLKRLSLAAAALGLTTLPAFAHLNPEEHGSFMAGVS----PFFGADHILAMVAVGIWASQVGTMAVGFLMA-PFVEPAILASVIGLGLLVAMAARLPTAAAAAVVGAFALFHGHAHGGELALQFGIGFMIATAILHLAGIALGLGIARF..................................... | 191 |
9 | -8.590 | [S] KOG4474 Uncharacterized conserved protein | ali follow.. | 9 | 120 | ................................................RNLVLMMTGYLLRIVELLFHHVVVLSAFTICLFYDLMLGIVVAGLLMELNSIFLNIITLVVFRLIVN----------VYMIYFVFASFSMSPWYIASTICVLILCLASSNMVLTYRLLAADGFCGASRQRQVPARVETEVPPEHQNLVKQVVQGSDQNDG. | 306 |
10 | -8.580 | [R] COG3030 Protein affecting phage T7 exclusion by the F plasmid | ali follow.. | 7 | 5 | .....................................................................PFIAIFLYVYIEISIFIQVAHVL--GVLLTLVLVIFTSVIGMSLVRNQGFKNFVLMQQKMAAGENPAAEMIKSVS--LIIAGLLLGFFTDFLGLLLLLPPVQKHLTVKLMPHLRFSRMPGGGFSAGTGGGNTFDGE.... | 139 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |