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Query: [S] COG3224 Uncharacterized protein conserved in bacteria, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTSPPTPDQAADEYFEYHFAHRVTPDHHEIFLECQEQLKILVTKYPGYISSESTELRSEGDIFVAETVIRFDTLENFMGWIDSPERRQLIYLEENAGYQFEGKVNTEGYSRWLKRKLSKPSPVWKINLLVLLVLYPTVMGFNLLFRKPDFIDFPTWMLFGNFCSVSITGWFAVPWVSGIYQRWLEGQGTKKEQALALVTIILALLLLLQFFRVIFQQLALast
1 -97.700[S] COG3224 Uncharacterized protein conserved in bacteria  ali  100  1MTSPPTPDQAADEYFEYHFAHRVTPDHHEIFLECQEQLKILVTKYPGYISSESTELRSEGDIFVAETVIRFDTLENFMGWIDSPERRQLIYLEENAGYQFEGKVNTEGYSRWLKRKLSKPSPVWKINLLVLLVLYPTVMGFNLLFRKPDFIDFPTWMLFGNFCSVSITGWFAVPWVSGIYQRWLEGQGTKKEQALALVTIILALLLLLQFFRVIFQQLA 219
2 -24.000[R] COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides  ali follow..  14  2..............IYEIAMLPVQKDKISEFRQAFGDVVPLLKRARGYRGHVLAQGVE--TPEVFNLIVRWRSLNDTPGFEASEDHEQFMEGIQDYFSGEPTVYHLEGDNSGWSDYRHGKS.................................................................................................. 107
3 -21.300[S] COG1359 Uncharacterized conserved protein  ali follow..  12  2..............LIQMVSINVKQGHAADFLEAFRINYEGTRQEPGNLRFDVLR--NPDDDHSFVIYEVFKSPEALDAHRKTEHYQECVRRIDPILAGPRTKTFYN................................................................................................................ 92
4 -12.400[S] COG5470 Uncharacterized conserved protein  ali follow..  13  2..............AKGYWIAQVDVRDSERYKDYVSTAKPAFERFGAFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYNSPEYQAAAKIRQE--VADAEMMIVEGI.............................................................................................................. 95
5 -6.820[A] KOG3408 U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing  ali follow..  7  1MGRVARKRKHHSNGNHALFRTRVYGRDLDQIHNDLTESEKFDKL----------IDPDLPGLGQHYCIEYFDSSQALLVHKKGKVHKRRLKNLREEPYTQEEAEAAVNIG............................................................................................................. 104
6 -6.820[R] COG5112 U1-like Zn-finger-containing protein  ali follow..  7  1MGRVARKRKHHSNGNHALFRTRVYGRDLDQIHNDLTESEKFDKL----------IDPDLPGLGQHYCIEYFDSSQALLVHKKGKVHKRRLKNLREEPYTQEEAEAAVNIG............................................................................................................. 104
7 -6.460[D] COG5657 CAS/CSE protein involved in chromosome segregation  ali follow..  9  2............DDIPTLLARTLNPTTSKSAEE---ALKVWELQDSSFALKNIVAEDTVDINIKLAASLYFKNYIK-KHWISDEVAELIKREIINLMLKSTTIIQVQLGEVIGYIANFDFPDRWDTLLPDLISKLSANIAVLSTAHAIFKRWRPLFRSDALFLEIKYVLDRFCEPFLALFVQTNNLLRNGPQDAESLNSLFQVILLECKLFYDLNCQ.. 218
8 -6.320[S] KOG4550 Predicted membrane protein  ali follow..  12  469........................................TTVDANGYLKNGSAGQLSQSAHLALQLPYNVLGLGRSANFLDHLYVGIPRPSGEKSIRKQEWTAIIPNSQLIVIPYPHNVPRSWSAKLY----LTPSNIV--------------LLTAIALIGVCVFILAIIG----------LHWQEKKADDREKRQEA----------HRFHFDAM. 609
9 -5.990[CU] KOG4097 Succinate dehydrogenase membrane anchor subunit and related proteins  ali follow..  11  51.................................................................................................................PESRAQGSYHWRGLSLAVLPLIAVPLVTTGPISTFTDTFLSLVLLGHC-FQSCIIDYIVYGKVHHYAMYLLS---------------LGSFLSFVGIYKLESQEAG 149
10 -5.770[G] COG2271 Sugar phosphate permease  ali follow..  10  93............................................................................................................................RVFLPAGLILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 184
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.