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Query: [C] COG3241 Azurin, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKAYLALISAAVIGLAACSQEPAAPAAEATPAAEAPASEAPAAEAAPADAAEAPAAGNCAATVESNDNMQFNTKDIQVSKACKEFTITLKHTGTQPKTSMGHNIVIGKTEDMDGIFKDGVGAADTDYVKPDDARVVAHTKLIGGGEESSLTLDPAKLADGEYKFACTFPGHGALMNGKVTLVDLast
1 -88.000[C] COG3241 Azurin  ali  100  1MKAYLALISAAVIGLAACSQEPAAPAAEATPAAEAPASEAPAAEAAPADAAEAPAAGNCAATVESNDNMQFNTKDIQVSKACKEFTITLKHTGTQPKTSMGHNIVIGKTEDMDGIFKDGVGAADTDYVKPDDARVVAHTKLIGGGEESSLTLDPAKLADGEYKFACTFPGHGALMNGKVTLVD 183
2 -55.400[P] COG4454 Uncharacterized copper-binding protein  ali follow..  16  1MTRLKLALLLTALATPAFAGGTHSG----------------GDNVMAIGEPGDKSKVTQTIQVTMKEKMMFTPAKFEF-KKGKTVRFAVKNVGELD-----HEFILDEQKANLEHKAVMAKA-------PEMEHDNPNAISLAPGESGEIVWKFT--NDGMFEFACLKPGHYAGMRGDLKVS. 156
3 -30.700[C] COG3794 Plastocyanin  ali follow..  15  1MHRRAFLAGGTTLSVGVLAGCIGPSVSKSDYDIGMVSNGFVPQE----------------------PVEGEDMATHQL-TAGDTVTWANTGSRN-------HTVTAYGSGLPEGASYASGGFDTEPDARRAWQDNVEGGGNISPGATYEVTLT----VPGEYYYFCI---HEGGMRGKLVVDD 149
4 -21.800[C] COG4263 Nitrous oxide reductase  ali follow..  17  516................................AETVKRAEKDGIDLMKDNKVIREGNKVRVYMVSM-APSFGLTEFKV-KQGDEVTVTITNLDEIED--VTHGFVMVNHGVCME---------------------------ISPQQTSSITFV--ADKPGVHWYYCSWALH-MEMCGRMLVEK 635
5 -19.900[S] COG4633 Uncharacterized protein conserved in bacteria  ali follow..  10  175..................PTDSTAKATSVTTSQSTHQIQPELSLPTESATKAVKTPEGTQEATITVEK-GYKPERVIV-EVGQPVRLDFQRHNLSKCF---DKLLIPD---------------------------FDLAVNLAPNQTTSVEFT--PKYPGEYQFTC----GMKMYRGVVEVKP 301
6 -15.500[P] COG2822 Predicted periplasmic lipoprotein involved in iron transport  ali follow..  21  1MTINFRRNALQLSVAALFSSAFMAN-----------------------------AADVPQVKVTVTD-KQCEPMTITV-NAG-KTQFIIQNHSQKA-----LEWEILKGV-----------------------MVVEERENIAPGFSQKMTANL---QPGEYDMTCGLLTN............ 108
7 -12.400[Q] COG2132 Putative multicopper oxidases  ali follow..  19  377.............................................................................ELKLGKSYVIDMENLTPQSHPMHLHG-VLSSSTR-------------------PVQPLISDTYLIQPNEKVQLGFVA--DNPGDWLLHCHIIEH-SGMTSYVRVV. 464
8 -10.700[U] KOG3317 Translocon-associated complex TRAP, beta subunit  ali follow..  12  54.......................................................................TRARLLVSKQKSDLRYTIFNVGSGA----ATKVRLVD------------SGFHPEAFDVVGGQPTAVVDRIAPQTNFTHVLVVRPKAFGYFNF................... 140
9 -9.690[P] COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport  ali follow..  15  3........................................................NSPRVCIQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQLLGRYWLITNGHGRETEV--------------QGEGVVGVQPRIAPGEE-------------QYTSGAVIETPLGTMQGHYEMID 103
10 -9.540[S] COG3863 Uncharacterized distant relative of cell wall-associated hydrolases  ali follow..  8  3LKKRVSMFLVALTMCGGLFVTPAKAVKTTNYAEEIAALQPGTTPEEIMKSASQIAKQQHVKQDVILKQFYKEITADKAEAKGN----IYYTNSYTAYYNHGHVGMYSAADKIVESVPSDGVRQIAYNARDVEDNSIVQTVSVSSGDPYSFNFVNNRNTGHDGAKNCS................ 204
11 -9.470[R] COG5633 Predicted periplasmic lipoprotein  ali follow..  12  1MRKCFGLVSLALLLLVGCRSHPEIPVNDEQSLVMESS--------------------------LLAAGISAEKPVLSTSDIQPSASSTLYNERQEPVTVHYRFYWYDARGLEMHPLER-------------------RSVTIPAHSAVTLYGSANFLGAHKVRLYLYL............... 125
12 -9.030[R] COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family)  ali follow..  12  1MKKSVIALLGLAVILGGCSNKVSYGDAQAVETVNVQKIAAEMVDSMMMSGSVSAITRDGRPIVFVERIKNKTSEHIDTESITDTISTKMLNSGK---------FRFVDMDRVEAVRDQLNFQNNDELVNQSTAIQFGKAQYMLYGNLSSIVKNAGSDKDVYYKMTMRL----DLQTGLIEWAD 181
13 -9.000[U] KOG1631 Translocon-associated complex TRAP, alpha subunit  ali follow..  10  1MRHLIVICTFSAPNKFGAYAAEAVEDDLVDVEGEEGAVTGEDAEADEDSDTGSSSSPNADTYLLFTKPLYTPGQQLDLP-GGKPVEFLFTNKGAEEFVIETVEASFRYPMDFNYFIQNFSAV--------------AYNREVKPGFESTVSYTFLPSAGRPFGLNIAL--NEAVFNETVLISE 190
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.