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Query: [S] COG3254 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .
# Score Template Links and tools%idFirst MQRMGMVLGLKPEKVEEYVRLHAAVWPDVLTMISACNIKNYSIYLRRPENLLFSYFEYHGTDYAADMAKMAADPKTQEWWAVCIPCQEPLATRKEGEWWASMDEAFHYDLast
1 -63.600[S] COG3254 Uncharacterized conserved protein  ali  100  1MQRMGMVLGLKPEKVEEYVRLHAAVWPDVLTMISACNIKNYSIYLRRPENLLFSYFEYHGTDYAADMAKMAADPKTQEWWAVCIPCQEPLATRKEGEWWASMDEAFHYD 109
2 -10.800[R] COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides  ali follow..  11  1MIYEIAMLPVQKDKISEFRQAFGDVVPLLKR---ARGYRGHVLAQGVETPEVFNLIVR--RSLNDHTPGFEASEDHEQFMEGIQDYFSGEPT................. 88
3 -8.680[S] COG1359 Uncharacterized conserved protein  ali follow..  8  1MLIQMVSINVKQGHAADFLEAFRIN---YEGTRQEPGNLRFDVLRNPDDDHSFVIYEV---KSPEALDAHRKTEHYQECVRRIDPILAG.................... 84
4 -6.560[S] COG1300 Uncharacterized membrane protein  ali follow..  8  2.............NIQRWIARRELNWQRLDALLRQVETKGLKSLPATEIRELASLYRSVAADLARAQTQQVGNILIHNLQSLTTRGYTQIYQGSRRQEWQAVVEFYRWE 97
5 -6.370[S] COG3309 Uncharacterized virulence-associated protein D  ali follow..  16  2MDRCLIVFDLDTKLLEQHNSSWRNGYADIQRVLYRHRFNQGTVYLSERGV........................................................... 55
6 -5.720[M] COG0810 Periplasmic protein TonB, links inner and outer membranes  ali follow..  12  159...........VDKPALVSAQVQPRYPRIARKRGIEGTVMYEIWLDAQGNQIKQQLLSSSGTEALDQSALEA---IKQW-----KFSPHILDGVPVAHRIHIPIRFKLE 248
7 -5.590[R] COG5562 Phage envelope protein  ali follow..  14  2............DQVVVFQKMFEQVFSWFYSELKHHRIAHYIYYLATDNIRII........................................................ 47
8 -5.310[S] COG3224 Uncharacterized protein conserved in bacteria  ali follow..  8  16..EYHFAHRVTPDHHEIFLECQEQLKILVTKY---PGYISSESTELRSEGDIFVAETVIRFDTLENFMGWIDSPERRQLIYLEENAGYQFEGKV............... 104
9 -5.030[F] COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component  ali follow..  9  1MYKVKVYVTLKESVLDPQGS-------AVQKSLHALSFTEVNEVRIGKYMELTLEKGEGDERIHDMCQKLLANTVIEDYRYEVEEVIPS.................... 84
10 -4.890[O] COG5661 Predicted secreted Zn-dependent protease  ali follow..  1  107............QDIRRHEESHIVIARSHASEMEREDCASLRADIDKVTSRVMEAHDEAQQYFDLVETINFENRFERLLTYRLERMRQ..................... 190
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.