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Query: [K] COG3327 Phenylacetic acid-responsive transcriptional repressor, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEALCQFIRLast
1 -106.000[K] COG3327 Phenylacetic acid-responsive transcriptional repressor  ali  100  1MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEAGVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAADELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAALAFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEALCQFIR 316
2 -15.400[S] COG3512 Uncharacterized protein conserved in bacteria  ali follow..  12  2.......................................................................................................SEGKFMRLIVFFDLPKRKAANQFRQFLLKDGYQMLQLSVYARIIRGRDSMQKHNKRLSEEGSIRCLEVTE............................................................................................................................................... 80
3 -13.200[K] COG3432 Predicted transcriptional regulator  ali follow..  16  29...........LERRKRGTMEIMFDILRNCEPK-------CGITRVIYGAGINYVVAQKYLDQLVKVGALNIKTENDRKIYEITEKGKLLRTHIEE............................................................................................................................................................................................................................ 106
4 -12.100[K] COG0640 Predicted transcriptional regulators  ali follow..  12  1..........................................MNEITMQTQADQPKVSSNLAILSEARLVDSIQMGREKIYRIAPEKFEDMVDWLDSILHSKSSG................................................................................................................................................................................................................... 63
5 -12.000[K] COG1695 Predicted transcriptional regulators  ali follow..  15  1MDRYAIKALVLLSKKPRTLYQMSKEI---------------------TGVQVSHGTLMPMIRKLLQERYIDFETRGREKVYHLTERGSRFVESLGKI........................................................................................................................................................................................................................... 77
6 -11.900[KH] COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon  ali follow..  16  2...............KMKTLFLLIKLAKMGAIGKEITVTMRELSR---ELDVSPQTVLRWLEELKEQGYIHKRESRKGTLVELTEKGINLLEKLYEEI.......................................................................................................................................................................................................................... 81
7 -10.300[S] COG4344 Uncharacterized protein conserved in archaea  ali follow..  15  1MSEYEKEIDELINDY--DMLRVLKHF---------TIAHVDYAKNITRYTEIPQMRVREYLKRLKDLGLLDYYTNTHHTYYQINKKAEAVLKEITPK........................................................................................................................................................................................................................... 103
8 -10.100[S] COG2512 Uncharacterized membrane-associated protein/domain  ali follow..  25  253......................VLDII----RGHKGRITQKDLRS---KLDYSEVKVSLMLSELEKRGLIRKLRNGRENILVLVDEEH.................................................................................................................................................................................................................................... 311
9 -10.000[K] COG1846 Transcriptional regulators  ali follow..  17  58.........................................LMKELAERLGVTKGAVSQLVDRLEAKALVRRTAVSRGIQVVLTDKGREAYRAHADMHAAFYEELQQS----------TKEEIAIFEQCVSKL....................................................................................................................................................................................... 143
10 -9.790[S] COG3398 Uncharacterized protein conserved in archaea  ali follow..  20  184..............QNATNQRIISEIQNG---------KCNTNLALAREIGVSRATISWYVKNLKETGLIDETRSGRSIIYSINPSYEPLIEK............................................................................................................................................................................................................................... 253
11 -9.560[K] COG5631 Predicted transcription regulator, contains HTH domain (MarR family)  ali follow..  17  87....................LILHSI-----RHRDREKKLADICLALD----DTHIATYAIRKLEKAGLLTTGKAAKEKTVKITAKGAEACAHYAQIRERLLVD-------STANARPSEETLSELAALLRFM....................................................................................................................................................................................... 185
12 -9.470[S] COG3373 Uncharacterized protein conserved in archaea  ali follow..  1MEPIVDGNILRSLNRSELRRKVLFYLLSI---------YRSYLSEISRAVKSDPSNVKGCLESLIGLGLVIVEQSKNGKYFKINPEIVEEVRNMKNM........................................................................................................................................................................................................................... 101
13 -9.330[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  17  1MKEYSIFREIINDMDTLKRHISVINVL-----LREQPIGIIKLSQ---ETGIPEHKIRYSLRILEQENIISPSREGAI----LTPDFIEHKEQIIADA.......................................................................................................................................................................................................................... 86
14 -9.060[K] COG2345 Predicted transcriptional regulator  ali follow..  12  1MGDVVKGNDAHTGDGDTRRKIL------LILLERAP----VIASDIAEQLQLSTVGVRRHLDNLVEENLAEAANPRQAKTYRLTDKGRSIFGHEYDSLAA-----------AALATLREVGGDDAVRQFARKRIETIVEG----SIEDTAKSLVEAFSRHGYAATV----------DATRNGLQLCQHHCPISTVATEFPELCEAEHQAVSEL....................................................................................................... 198

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.