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Query: [R] COG3383 Uncharacterized anaerobic dehydrogenase, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGAKVSVRINGEARDVVEGTRILDYLNAEGIQHPHICYSEQIGPIQSCDTCMCEVDGELMRACSTNLTDGMEIKTNSELAKDAQLEAMDRILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQDRPYREKGYLNDFTHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDDRPANLSSCVSCGLCATVCPCNALMEKSMLGQAGFMTGLDEDMLEPMIDMVKKVEPNYQTVFAVSEMEAAMRETRTKKTKTVCTFCGVGCTFEVWTKDRKILKVEPTGEGPVNKFATCVKGKFGWDFVNSEKRITTPLIREGNEFVPASWEDAIHLVATKLREIQAKYGNDSIGFISSSKTTNEENYLMQKLARQVFETNNIDNCSRYCQAPASDGLTRTVGIGADSGTVEDIESAGLVIIVGASPADGHPVLASRIKRAQKTRGQKLIVSDLRKHEMAERSDLFIHPKQGTDFVWLTAVAKYIIDQNWHDQVFMENRISNVADYLAFLEPFTLEYAEKETGLPAETLKLVAEMIHEADGTAVCWGMGVTQNIAGSHTSSAIANLLLVTGNFGRHGAGAYPLRGHNNVQGACDMGSLPNVLPGIQPLGNDEVRARFEEAYGVSISPEPGLKNNEMLDAIEAGTLHSMYVIGEEMAWVDSNSNHVQEILSSLDFFVVQDVFLSKTAQFADVVFPAAPSLEKEGTFTNTERRVQRLYEVLEPLGDSKPDWWIIQEVARACGRTDWNYDHPSEIMDEIASLAPFFAGVRYDRMQGFNSLVWPVSADGKDMPLLYEERFNFPDGKAQFSTLPYIAPITFPEEFNLTLNNGRLLEQFHEGNLTDKSKGLDYKLPEVFVEVSHELAKERDIESGSLVRLSSPYGRIKLRAVVTERMKGNEVYVPMHSVSSETAVNLLTSSAGDVRTKTPAYKQTKVNLTVLEKTGKNPLPDHNPRNRKRFPQNGAEVERKWSREDYQPISKVNCACGGNCGCGGKGRNHLast
1 -270.000[R] COG3383 Uncharacterized anaerobic dehydrogenase  ali  100  1MGAKVSVRINGEARDVVEGTRILDYLNAEGIQHPHICYSEQIGPIQSCDTCMCEVDGELMRACSTNLTDGMEIKTNSELAKDAQLEAMDRILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQDRPYREKGYLNDFTHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDDRPANLSSCVSCGLCATVCPCNALMEKSMLGQAGFMTGLDEDMLEPMIDMVKKVEPNYQTVFAVSEMEAAMRETRTKKTKTVCTFCGVGCTFEVWTKDRKILKVEPTGEGPVNKFATCVKGKFGWDFVNSEKRITTPLIREGNEFVPASWEDAIHLVATKLREIQAKYGNDSIGFISSSKTTNEENYLMQKLARQVFETNNIDNCSRYCQAPASDGLTRTVGIGADSGTVEDIESAGLVIIVGASPADGHPVLASRIKRAQKTRGQKLIVSDLRKHEMAERSDLFIHPKQGTDFVWLTAVAKYIIDQNWHDQVFMENRISNVADYLAFLEPFTLEYAEKETGLPAETLKLVAEMIHEADGTAVCWGMGVTQNIAGSHTSSAIANLLLVTGNFGRHGAGAYPLRGHNNVQGACDMGSLPNVLPGIQPLGNDEVRARFEEAYGVSISPEPGLKNNEMLDAIEAGTLHSMYVIGEEMAWVDSNSNHVQEILSSLDFFVVQDVFLSKTAQFADVVFPAAPSLEKEGTFTNTERRVQRLYEVLEPLGDSKPDWWIIQEVARACGRTDWNYDHPSEIMDEIASLAPFFAGVRYDRMQGFNSLVWPVSADGKDMPLLYEERFNFPDGKAQFSTLPYIAPITFPEEFNLTLNNGRLLEQFHEGNLTDKSKGLDYKLPEVFVEVSHELAKERDIESGSLVRLSSPYGRIKLRAVVTERMKGNEVYVPMHSVSSETAVNLLTSSAGDVRTKTPAYKQTKVNLTVLEKTGKNPLPDHNPRNRKRFPQNGAEVERKWSREDYQPISKVNCACGGNCGCGGKGRNH 995
2 -169.000[C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G)  ali follow..  16  2..LMATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGACRQCAVKQYGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHDCPVCEEG-GNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYADGTDLGVYGAHDNVYFGRPEDGTL---ESEFSGNLVEICPTGVFTDKTHSERYN-------------------------------------RKWDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLKDRPRQPVQRRGDDFITLNAEQAMQGAADILR------QSKKVIGIGSPRASVESNFALRELVGEENFYTGIAHG---EQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALAVRQAVK-GKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAPVEDQARLGFAIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISG----TNAGSLEVIQAAANVAKALKGRGA-DVGITMIARSVNSMGLGIMG---------------------------------GGSLEEALTELETGRADAVVVLENDLH-RHASATRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVINNEGRAQRFFQVYDPKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDAVVAKIPELAGIKDAAPDATFRIR-QPQDIDTMFTFSMEGNNQPETSENGLDYFTSVPARFQPQDGKWRIAPYYHL--FGSDELSQRAPVFQCRMPQPYIKLNPADAAKLGVNAGTRVSFSYDGNTVTLPVEIAEGLTAGQVGLPMGM---SGIAPVLAGAHLEDLKEAQQ..................................................................... 910
3 -131.000[C] KOG2282 NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit  ali follow..  19  29.SNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQG-GECDLQDQSMMFGNDRSRFLEGKRAVEDKNIGPLVKTIMTRCIQCTRCIRFASEIAGVDDLGTTGRGNDMQVGTYIEKMF---MSELSGNIIDICPVGALTSKPYAFTA--------------------------------------RPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTYTSWEDALSRVAGMLQ----SFQGKDVAAIAGGLVDAEALVALKDLLNRVDSDTLCTE----EVFPTAGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYTYDHL--------------------------------------------------GDSPKILQDIASGSHPFSQVLKEAKKPMVVLGSSALQRNDGAAILAAVSSIAQKIRGVTGDWKVMNILHRIASQVAALDLGYKP------------------------------------GVEAIRKNPPKVLFLLGADGG------CITRQDLPKDCFIIYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGM-TLPYDTLDQVRNRLEEVSPNLVRYDDIE----------------------------GANYFQQANELSKLVNQQLLADPLVPPQLTIKDFYMTDSISRASQTMAKCVKAVTEGAQAVEEPSI.................................................................................................................................. 726
4 -129.000[C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing  ali follow..  17  21........................................................................................................................................................................................KTSAIGSLALASSAFTLPFSRIAHAA--------------------------------------ADLASGNVAEKAVWSSCTVCGSRCLLRLHVKDDTVYWVEGNDEYGNHQVRACLRGRSIRRRMNHPDRLKYPMKRVGGKFERISWDEALDTIGDNLKRILKDYGNEAVHVLGVDGGNITNSNVPYRLMNACGGYLS--RYGSYSTAQISAAMSYMFG-GNDGNSPDDIANTKLVVMFGNNPAETRMSGGYYVEQARERSNARMIVIDPRYNDTAAREDEWLPIRPGTDGALAAAIAWVLITEDLIDKPFLDKYCIGYDETTLPASAKTPQWAAQITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTARAIAMLSVLTGNVGINGGNSGVREGTWDLG-----------VEWFSMLENPVKTQISVFTWTDAIAEMTATRDGVRGKDKLDVPIKFLWCYASNTLINIAHTHEVLQDDSKCEMIVGIEHFMTASAKYCDILLPDLMPTEQEDLISHNMGYVILGQPATSPKFERKPIYWTLSEVAKRLGPDVQTFTEGRTQHEWVKYLARNPEMPDYEEMKQTGIFKKKCPEEHYVAFRAFANPLKTPSGKIEIYSERLATDDPLRQRYPLQLTGFHYKARTH--SSYGNIDILQQACPQE-IWINPIDAQARGIQHGDTVRVFNQNGEMLIPAKVTPRILPGVTAIGQGAWLNGGSINILTSHRPSPLAKGNPSHSNLVQVEKA.......................................................... 811
5 -89.700[C] COG5013 Nitrate reductase alpha subunit  ali follow..  16  11.........................................................................................................................................................................................FKKKQGEFADGHGETSNESRAWEGAYR----------------------------------------QRWQHDKIVRSTHGNCTGSCSWKIYVKNGLITWETQQTDYPNHEPRGCPRGASYSWYIYSANRLKYPKVRKLGGFVRSSWDEVTEIIAAANVYTAKTYGPDRVIGFSPIPAMSMVSYAAGARYLSLIGGVCLSFYDWYCDLPP--ASPQIWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEV-RYKGTKTVSITPDYSEVAKLTDLWLNPKQGTDAALGMAFGHVILKEFHLDRPYFVDYCRQYTDMEDADTPYTPAWQERITGVPAARATQVAREFADSGKAMVIIGAAMNHWYHMDMNYRAVINMLMMCGCIGQSGGGWAHYVGQEKLRPQTGWAPLAFGLDWSRPPRQMNGTSFFYLHSSQWRHEKLSMHEVLSPLADASRGVMNDDLGKAGGPRPTEVDWVDDGAEGKLDLVTTLDFRMSSTCMYSDIVLPTATWYEKDDLNTSDMHPIHPLSAATDPAWEAKSDWEIYKAIAKKFSAVAEGHLGVEQLLHDTPTELAQPFGGDGHDWKKGE----PETNGQVAVKAWEAIPWRTITGRQQFYQVSYRPPPNGNPEITLNWITPHQKWGIHS-TYSDNLLMLTLSRGGPIIWLSEHDAAKAGIVDNDWVEVFNANGAATCRAVVSQRVKDGMVMMYHAQGTRGGHHNSVTRVVLKPTHMIGGYRDEFVVVRKMSKV....................................................... 1237
6 -67.800[C] COG1029 Formylmethanofuran dehydrogenase subunit B  ali follow..  22  2.................................................................................................................................................................................................................................................................PVIKDAVCSLCGSLCDITVTVEDNKITKI----------ENACILGHSKFVGMFEHDRIETPMIRKDGELVPVSYEEAIEAAAKILVNSRRI--------LSYGWCSTSCEAVSGAIELAEETGSVIDSTANVCHGPSALAAQEKGSPSASLG--EIKNRADVIVFWGCNPVHAHPRHMSRYSTEKGRKGRTMVVIDVRKTDTAKLADNYVEIEQGSDLLLITALRSIV-------------------------NGHEDVVPETVAGVPKAEVLELAETLKNAKFVCIFFGMGVTQSRSKYKNGDAVSSLISDLNQHTK--AVMIGMRGHYNVTGFGQVATWETGFPMAIDFARG---------------PYYNPGETGANDLLVREEPDAAIIAAADPGAHFPQ--KAVRHLAKIPVIQI-DPYANPTTEIADVVIPSAIVGEAEGTAYRMDAISLRMKKLIDT--RFKTDEEIVKDLTAKVRELK........................................................................................................................................................................................................................................................... 431
7 -33.500[C] COG1153 Formylmethanofuran dehydrogenase subunit D  ali follow..  16  2.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KIRIITYSDIFQDKAMVENRFGEEYRN--LSAVIKMDPADLKQLNVKKGDTVVLKNSFGTIVVKAEESETPHRGIAYMPNSPW-----SNMLVSDGTGG-TGVPKFKDISVTVTNAKGE....................................................... 114
8 -20.800[C] COG1146 Ferredoxin  ali follow..  22  26...............................................................................................................................PWWGVDRKEIEWYPTIDYDKCVTCGICFVTCGR----RVFDFDKKEGKVIVA------RPYNCMVACQTCMNLCPTGAIS.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 95
9 -19.400[C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit  ali follow..  26  47.............................................................................................................................................VIDESKCVKCYICWKFCPE----PAIYIKEDGFVA---------IDYDYCKGCGICANECPTKAIT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 99
10 -19.100[C] COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB  ali follow..  16  1MNAIWIAVAAVXLLGLAFGAILGYASRRFAVE-PVVEKIDEILPQSQCGQCG-------YPGCRPYAEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQELTPARMVAVI-------------------------DENNCIGCTKCIQACP----VDAIVGATRAMHT---------VMSDLCTGCNLCVDPCPTHCIS.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 163
11 -16.800[C] COG1142 Fe-S-cluster-containing hydrogenase components 2  ali follow..  18  9.................................STLC---------GCHTCEA--------ACSETHRQHGLQSMPRLRVMLNEKESA-------PQLCHHCEDA---CPVNAITRVDGA--------------------VQLNESLCVSCKLCGIACANTPKAPPAPPAPARISTLLDWVPGIRAIAVKCDLC-ACVRMCPTKALH.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 165
12 -16.200[C] KOG3256 NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit  ali follow..  13  1...............MSLTMRIFTASRNGQRLFGSH--------------ARLLAAQRAEPKDIVEVPKGYVYVNNKELSMEFADITDRAASTMFFGELLR---------FAVTLAHIFKEPATINYPFEKGPLSPRF---PSGEERCIACKLCEAICP----AQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 173
13 -16.100[C] COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)  ali follow..  26  58...............................................................................................................................................GEERCVACNLCAVACP----VGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 117
14 -16.000[C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit  ali follow..  15  25.KNVREYRIDTYYIDVDCGPMVLDALLYIKNNIDPTLTLRRSCREGICGSCAMNIDGTNTLACTKGMEEIKGTVK------------VYPLPHMPVVKDLVPDLSNFYAQHRSIEPWLKTVSPTPAKEWKQSHEDRLK---LDGLYECILCACCSTSCDRYLGPAVLLQAYRWLIDSRDEATGERLDNLRCHTIMNCAQACPKGL...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 241
15 -15.900[C] KOG3049 Succinate dehydrogenase, Fe-S protein subunit  ali follow..  12  37.PRIKKFAIQTYEVDLKCGPMVLDALIKIKNEVSTLTFRRSCR-EGICGSCAMNINGGNTLACTRRIDTNLNKVSKIYPLPHMY--VIKDLVPDL----------SNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLRCHTIMNCTRTCPKGL...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 257
16 -14.500[C] COG1140 Nitrate reductase beta subunit  ali follow..  10  1......................MKIRSQVGMVLNDKC---------GCHTCSV--------TCKNVSREGVEVETKPGQGFPTDWENQEKYKGGW-LQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDLHTAPEGSKSQPIARPRSLITGERMAKIEKEDDLGGEFDKLAKDKNFDNIQKAMYSQFENTFCEHC-ACVATCPSGAIYKREEDGIVLIDQDK-------------------------------------------WRMCITGCPYKKIYFNWK--------SGKSEKCIFCY------------PRIEATVCSETCVGRIRYLGVLLYDADAIERAASTENEKDLYQRQLEVFLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMAMEWKLALPL------HPEYRTLPMVWYV------LSPIQSAADAGELGSNGI-LPDVESLRIPVQYLANL---LTAGDTKPVLRALKRMLAMRHYKRAETVDGKVD--------------TRALEEVGLTEAQAQEMYRYLAIAN----------DRFVVPSSHRELAREAFPEKNGCG--GDGCHGSDTKFNLFNSRRIDAID........................................................................................................................................................................................................................................................................................................................................................................................................... 503
17 -14.100[C] COG0437 Fe-S-cluster-containing hydrogenase components 1  ali follow..  17  1........................MTTQYGFFIDSRC---------GCKTCEL--------ACKD--FKDLGPEVSFRRIYEYAGGDWNVFAYYLSISCNHCDDPA--CPSGAMH-------------------KREDGFVVVDEDVCIGCRYCHMACP-----------------GAPQYNAEKGHMTKCDGC-ICVESCPLRALE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 151
18 -14.100[C] COG1145 Ferredoxin  ali follow..  13  150LPERDTISEKSEILPYEDAVKLVKERDYIAV-GYCPCRVMARLVGEGCRHSIIHMGSVGKYMVEHGLGRRISADEAIEILRQSNREGLVHLTERSKHVATICNCCSDCCVFFKAVHEAKHPNT----------IAHSSYLATVDTSRCIACGICMLRCP----MKAIKAKINREPASV--------DAEKCLGCGVCVPTCPMEAIE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 336
19 -13.000[C] COG1150 Heterodisulfide reductase, subunit C  ali follow..  20  36..............................................................................................................................................LSVQACYQCGTCTGSCTSYRTRLIMRKLQLGLVDEVIKSDE------MCTTCYTCYERCPRGV...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 99
20 -12.400[C] COG1141 Ferredoxin  ali follow..  21  47............................................................................................................................................VYVDEITCIGCKHCAHVARNT-----FYIEPDYGRSRVIRQDG-----DAEEVIQEAIDTCPVDCIH.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 103
21 -12.200[C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs  ali follow..  15  60.IMPLTLKVNGKQLEVDTRTTLLDALREIGTKK---CDH------GQCGACTVLVNGRRLNACLTLAHQGAEITTEGLGSPDNLHPMQAAFIKHDGFQCGYCTSGSSVAVLKEIQDGIPSHVTVDLVSPPERTADEIRERMSGNICRCGAYANILAAIEDAAGE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 226
22 -12.000[C] COG2440 Ferredoxin-like protein  ali follow..  16  18..................................................................................................................................RYLVDPGRPHIKVRPHERPSANLLTHICP----AKCYELNDKGQVE---------TTSDGCMECGTCRVLCEASGEIV................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 84
23 -11.900[C] COG1152 CO dehydrogenase/acetyl-CoA synthase alpha subunit  ali follow..  11  240.TEKPVVLCIGHNVLP--GADIVDYLDENQVEVCGICKQLRFIRSGVADVIVVDEQCVRTDVLEEALKNRSAVIATTDKTDEDPDKIVNDLINGNIEGALILDPEKVGEVAVKTAMKLAPIRKSLKKLPDIDEIIE-------LASECTDCGWCQRVCNSLPVMDAVKKAADGDLSKLEEMA----IEELCYTCGRCEQECERNIPIVSMVTKAGERRVKDEKYRIRAGRGPAQDVEIRRVGAPIVPEGGKDVALMAKEFLERNYIVVTTGCGAMSIGEYRDEDGQTLYEKYGVNMGSCVSNAHVSGAAIKIANIFAQKPLE-------GNFEEIADYILNRVGACGVAWGA------YSQKAAAIATGVNRWGIPVVLGPHGSKYRRLFLGRADDEEKWKLKDLRAPEHLLYAAENREEATVMIAKLC-------IRPTDTPKGRQMKL-YIDLHRKYLGTIPDIDRFIRTEKDIPIVRDVMKILEEKNWKPRELPKEPS.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 776
24 -11.700[C] COG0348 Polyferredoxin  ali follow..  12  92...................VVVLYAILGSRVFCAWVC------PLNIVTDASAWLRRKLEIR-VAALGRALIYGFGATVWLVLAVFLFDLFIVEHGWCGHLCPIG----AAYGVIGAKGLFRIKVEHR-----------------QQCDNCMDCYNVCPE---------QVLRDPLHAKKSESPLVLSKDCISCGRCIDVCPEKVFIFTTRFNHSVNHSGE...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 291
25 -11.600[C] COG0633 Ferredoxin  ali follow..  18  26.TNMPKIIVEGAVLEAQTGETILDVALKNGIAIEHAC-----EKSCACTTCHCIVREGFDSSCQARVAEDLVVEIPKYTLNHASED............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 138
26 -11.300[S] COG3862 Uncharacterized protein with conserved CXXC pairs  ali follow..  17  4.....................................................................................................................................................................................................................................................................EMICIVCPVGCHISVNTETYEV------------KGNSCPRGEYGKEELTAPKRVVTSTVKKNALDKRCPVKTEKSIPKELNFKLMDELKNIEL................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 87
27 -10.800[Y] KOG2439 Nuclear architecture related protein  ali follow..  11  5...................................................................................................................................LSESDLNDFI----SPALACVKPTQVS-GGKKDNVNMNGEYEVSTEPDQLEKVSITLSDCLACSGCITSSEEILLSSQSHSVFLKNWGKLSQQQDKFLVVSVS------PQCRLSLAQYYGLTLEAADLCLMNFFQKHFQCKYMVGTEMGRIISISKTVEKIIAH----------KKQKENTGADRKPL---------------LSAVCPGFLIYTEKTKPQLVPMLLNVKSPQQ---ITGSLIRATFESLAIARES--CFDKKLEASRPESLDDGIDCVITPREIVTMLQELNLDFKSFLT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 273
28 -10.800[C] COG0247 Fe-S oxidoreductase  ali follow..  11  272..............................................................................................................................................LDLYACVECGRCTNMCPATGTGKMLSPMDLILRLRDHLTEKGAAVTS-RSPWVPAAAFRHTRGNQLAAASAGSGSQEAAAALDYNPSLIGDVITEEEIWA--------------------TTCRNCEDQCPVMNEHVDKII---------DLRRYLVLTEGKMDSDA----QRAMTSIERQGNPWERENWRDEAPDIPTVKEMKKEGKEFEYLFWVGSMGSYDNRSQKIAISFAKLLNHAGVS---------------AILGN-------KEKNSGDTPRRLG-NEFLFQELAEKNISEFEKNDVKKIVTIDPHAYNLFK--NEYPDFGFEGEVYHHTEVLAELVKNGFHDSCYLGRYNEVYDPPREILKAIPGVQLVEMCGINVARTEQAPSVISSGCPYCLTMLGDGTKAKEAEDQVKTYDVVELLAQSVLGADL................................................................................................................................................................................................................................................................................................................................................................................................................................ 699
29 -9.570[S] KOG4367 Predicted Zn-finger protein  ali follow..  4MEEELKCPVCGSFYR------------------PIICSHN-------CQACARNIASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHR------------SLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEAT--------------------------VMCEQCDVC-DPC----------------RLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKM-CLEEGKHSSHEVKALGAMWKLHKSQNGLSDRAKEAKEFLVQLRNMVQQIQENSVEF-----EACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKV-VRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGF................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 382
30 -9.270[R] COG4624 Iron only hydrogenase large subunit, C-terminal domain  ali follow..  10  3......................................................................................................................................ALIRPPMSFFADLPKDNKKCIKIGSP-----------------------LALSLSDCLACSGCVSADEAGALSEDL------------SFVLDLSPQTSFVLSPQSKINIFNLYREDGMEYREFEAVLSSFLRSKFNIHRIVDTSYLRSKIYEETYREYMATNHLCP--RTAPYLIGYLSRVKSPQQMAFSLVKGSRTVSVMPCQDKKLENGRDGVKFDFI-------LTTRG--FCKALDSLGFRRPARASGKSLCSMEEAETTQWNIG-TSSGGYAEFILGKHCVVETREIRNGIKEHLLDDGRTISQITGLENSINYFKSSKTKGPRHKMTEIF-LCKNGCIGGPGQERVNDVEMDIREYDRNGREQPRIFYSSPGLEEKRVFR.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 352
31 -9.190[TZ] KOG1044 Actin-binding LIM Zn-finger protein Limatin involved in axon guidance  ali follow..  12  13........VEGEVVTA------------LGKTYHPNCF--------ACTICKRPFPPG--AGCGRDIKNGQALLALDKQ---------------HL-GCFKCK----SCGKVLTGEYISKDGAPY-----------EKDYQGLFGVKCEACHQFIT-------GKVLEAGDKHYHP-------------SCARCSRCNQMFTEGEEMYLQGS---------HPDCKQSTKTEEKLRPTRTSSESIYSRPGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYDDKQERQSLGESPRTL-----SPTPSAEGYQDVRDRMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHFHRPGNEPSSGRNSPLPYRPDSLPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQHRALAAQSKSSEDIIKFSKFPAAQA-----PDPSETPKIETDHWPGPPS------------FAVVGPDMKRRSSGREEDDEELLRRRQLQEEQLMKLNSGLGQLILKEEMEKESRERSSLLASRYDSPINSASHIPSSKTASL---------PGYGRNGLHRPVSTDFANSYGDVSGGVRDYQTLPDGHMPAMRMDR-SMPNMLEPKIFPYEMLMVTNRGRNK---------ILREVDRTRLERHLAPEVF---REIFGMSIQEFDRLPL----WRRND-----MKKKAKL........................................................................................................................................................................................................................................................................................ 625

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.