current user: public

If you have questions about the server, please let us know.

Query: [S] COG3398 Uncharacterized protein conserved in archaea, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .
# Score Template Links and tools%idFirst MDLRAIYLIFAGTKFEKKFTICLLLFLLTTTAGAKEYIVSPCTSDQAGVSVNGEEVVLLEDTIEPYWHFLLWLALMNVLSVVDVLILPAKLIFAILGFRITERADVFENSNRARIYEYIKTRPGAYLSEIIEKAGIDRGAARYHIKILKAHHKIEAYRESGKTRYFQNNSTYGEEEKKVVSALQNATNQRIISEIQNGKCNTNLALAREIGVSRATISWYVKNLKETGLIDETRSGRSIIYSINPSYEPLIEKYGLast
1 -91.900[S] COG3398 Uncharacterized protein conserved in archaea  ali  100  1MDLRAIYLIFAGTKFEKKFTICLLLFLLTTTAGAKEYIVSPCTSDQAGVSVNGEEVVLLEDTIEPYWHFLLWLALMNVLSVVDVLILPAKLIFAILGFRITERADVFENSNRARIYEYIKTRPGAYLSEIIEKAGIDRGAARYHIKILKAHHKIEAYRESGKTRYFQNNSTYGEEEKKVVSALQNATNQRIISEIQNGKCNTNLALAREIGVSRATISWYVKNLKETGLIDETRSGRSIIYSINPSYEPLIEKYG 255
2 -21.400[K] COG1777 Predicted transcriptional regulators  ali follow..  11  10........................................................................................................AAIENSTRREIIRMLTQFERSYALELSRSIGLSQQAILKQLEMLERANLVTSIGFVPSSVGAKRKKKKDELMAAIKYQLEDEDPITREIVLEYLNTFDVEEVSRRTALPLEIVLKILKSK---GIVLDE...................... 197
3 -19.900[K] COG4190 Predicted transcriptional regulator  ali follow..  1.....................................................................................................................MTESTPPLHPMEREQLRAES--TLVVTVTPSSEDDITDSIAALEQGDAMDSTPTLSFTSYDDLMDTLTPRVLELIEAIRQEEPASINETARVVDRDVKNVHEELSRLAHLGIIFFEEDGQRKRPVVWFDELVI..... 133
4 -19.100[K] COG2345 Predicted transcriptional regulator  ali follow..  14  5..................................................................................................VKGNDAHTGDGDTRRKILLILLERAPVIASDIAEQLQLSTVGVRRHLDNLVEENLAEAANPGRPAKTYRLTDKYDSLAAAALATLREVGGDDAVRQFARKRIETIVEGITPADVTDQSIEDTAKSLVEA----FSRHGYAATVDATRNGLQLCQH.. 173
5 -18.500[K] COG1497 Predicted transcriptional regulator  ali follow..  22  2.................................................................................................................................................................................KALRKKGELTRFQILSEIAMRQPVRQKDIADKLGVTVQAVSENIKSLIAEGLV--ESGSGRSHYKITRRGAEKIKEA. 77
6 -18.400[K] COG0640 Predicted transcriptional regulators  ali follow..  21  1..........................................................................................................................................................................................................MNEITMQTQADQPKVSSNLAILSEARLVDSIQMGREKIYRIAPEKFEDMVD.. 51
7 -16.400[S] COG4860 Uncharacterized protein conserved in archaea  ali follow..  16  19........................................................................................................HAADSEVKRKLLLDLSTGW-ITLPVIEQKYG---KEGRRALLYLDKIKMIETQQNGPEKAYHTYYTNVQINIMGSLSELADEYEDKIKAMMKNGEGVFLGDVSDSLGISQTLIR---------GIVK-----RSSILEIRGYKIELVSG.. 166
8 -16.400[S] COG2512 Uncharacterized membrane-associated protein/domain  ali follow..  22  247........................................................................................................................................................................................SPELCEVLDIIRGHKGITQKDLRSKLDYSEVKVSLMLSELEKRGLIRKLRNGRENILVLVDE......... 309
9 -15.900[K] COG4189 Predicted transcriptional regulator  ali follow..  12..................................................................................................KEFDVLKAAASLIRVQILKLLHEANGLNVNEIAQRLALPQSTVSAGVAVLEEAGLLRTETRKARKGSQKICFATCDELIVSFRKPETPAASNYIAVAMPLGLYTQSSVTAPCGICSPE....................................... 129
10 -15.500[K] COG3432 Predicted transcriptional regulator  ali follow..  14  32.......................................................................................................................................................................................RKRGTMEIMFDILREPKCGITRVIYGAGINYVVAQKYLDQLVKVGALNIKTENDRKIYEITEKGKLLRTHI. 104
11 -15.300[K] KOG3233 RNA polymerase III, subunit C34  ali follow..  16  16............................................................................................................VEIENRIIELCHQFPGITDQVIQNEMHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQNAGKMKGS-----DNQEKLVYQIIEDNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSSKKKVYMLYN.......... 154
12 -15.000[KH] COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon  ali follow..  22  2........................................................................................................................................................................................KMKTLFLLIKLAKMGTVTMRELSRELDVSPQTVLRWLEELKEQGYIHKRESRKGTLVELTEKGINLLEKL. 77
13 -14.400[K] COG5631 Predicted transcription regulator, contains HTH domain (MarR family)  ali follow..  10  82........................................................................................................................................................................................SPIEILILHSIRHRDRKKLADICLALDIETHIATYAIRKLEKAGLLTTGKAAKEKTVKITAKGAEACAHY. 153
14 -14.300[K] COG4742 Predicted transcriptional regulator  ali follow..  13  2..............................................................................................................................................................................QSELIDVVFRSQKRRDLLLLLGEEP-RTMEDIKVLLDVSPTAILPQIKRLTDSNLVIQKNGS----YELTDMGEQVFKKA. 76
15 -14.100[K] COG3711 Transcriptional antiterminator  ali follow..  14  2............................................................................................................NGDNQQILREIVLNPTIHGKELESIFGLSRRQLGYRIQKINLQGNFIVSSEIMTLFKRDVSEQQMLNGNNVIFSIETRRYYLMLMLFSKENAMSLNHFSIDLQVSKNTVIHDINHVKEQSLKYSRKHG----YEIVGDEFEV..... 159
16 -13.900[K] COG3355 Predicted transcriptional regulator  ali follow..  21  26........................................................................................................................................................................................SKSDVEVLHILLQNGKMTTDDLSQKLNVTKASISKALNNLLDKGLIQREKA.................... 76
17 -13.900[K] COG1846 Transcriptional regulators  ali follow..  18  41........................................................................................................................................................................................TPSEIHTIDAIGTDEGLLMKELAERLGVTKGAVSQLVDRLEAKALVRRTAVSRGIQVVLTDKGREAYRAH. 113
18 -13.600[K] COG5111 DNA-directed RNA polymerase III, subunit C34  ali follow..  15  9............................................................................................................PKNAKVIYEHCLKQISLSQQDLVEAISISVNDLSSALNILLSRRLLDPLRQGNVLVYRAVRLDEAKTVSTM-----EGDEQIVYSFIKNNEGIWRKTLTLRTNLHVSVVDRCLKSLESKNLVKSIKSPTRKIYMLYD.......... 149
19 -13.200[S] COG4344 Uncharacterized protein conserved in archaea  ali follow..  19  1...........................................................................................................................................................................MSEYEKEIDELINDYDMLRVLKHFTIAHVDYAKNITRYTEIPQMRVREYLKRLKDLGLLDYYTNTHHTYYQINKKAEAVLKE.. 99
20 -13.200[K] COG1510 Predicted transcriptional regulators  ali follow..  20  30........................................................................................................................................................................................PSTVGRVLGIIMNRKPMTLSELSEATGMSKTRMSQVVREMIDANIAEKVFEVRKDLYDVEQDYYQTFIS.. 101
21 -13.100[S] KOG4608 Uncharacterized conserved protein  ali follow..  11  84.................................................................................................IQTGGKFEIQRRREIRAVCHVIKATRGITLGELCGKVKIAKEQIAEILADLSGAAQI--LAAGVDEKRWVMPEYEAAPEGCISLPVVRWMAESALVLIVSKLGIQLKDVITTYEVQPIAIREIVRKEKSAKKSPKI...................... 238
22 -13.100[S] COG4861 Uncharacterized protein conserved in bacteria  ali follow..  10  58..................................................................................................SATAALQAWDTAGAGSPLLVVGPRLHPSSAETLRARGLWYIDGAGNAYLRHQGGLLIDVRGRRSAVSAQPGTLGDGLHSDGPRNPFTPKRAQVVCVLLDAPQLPLRAIAASAGVSVGMAKETMDTLRTTGFFEHLGSRRRLV-----RTDELLDLWA 212
23 -13.100[S] COG3373 Uncharacterized protein conserved in archaea  ali follow..  11  8................................................................................................................................................................................NILRSLNRSELRRKVLFYLLSIYRSYLSEISRAVKSDPSNVKGCLESLIGLGLVIVEQSKNGKYFKINPEIVEEVRN.. 97
24 -13.000[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  17  18.........................................................................................................................................................................................KRHISVINVLLREQPIGIIKLSQETGIPEHKIRYSLRILEQENIISPSREG................... 68
25 -12.600[K] COG1695 Predicted transcriptional regulators  ali follow..  14  3.........................................................................................................................................................................................RYAIKALVLLSKKP---SKEISTGVQVSHGTLMPMIRKLLQERYIDFETRGREKVYHLTERGSRFVES.. 73
26 -12.100[L] COG3415 Transposase and inactivated derivatives  ali follow..  14  18.................................................................................................LDKRIKKLEKDTRVLQRLYFIRYLYRGMSVEEAAELVGITKATGYTWLKRWNTRGYLIPEFGGGRP-----------------SKLTKDQKEELKEMLKERDSWTTKEVQELISYSSWQVR---RILKSFGM--KYAKPYQKDYRKPENAEDSLKKHG 161
27 -11.600[KG] COG1349 Transcriptional regulators of sugar metabolism  ali follow..  1.........................................................................................................MKPRQRQAAILEHLQKQGKCSVEELAQYFDTTGTTIRKDLVILENAGTVIRTYGGVVLNKEESDPPIDHKTLINTHK-KALIAAAAVKYIHDGD-----SIILDAGSTVLQMVPLLSRFSNITVMTNS...................... 122
28 -11.300[S] COG4519 Uncharacterized protein conserved in bacteria  ali follow..  14  12.............................................................................................................................................................................................YLALLVESLERPNVPKLIEKTGWPRRTIQDVIKAMPGIGIELNFVQD................... 58
29 -11.300[K] COG5625 Predicted transcription regulator containing HTH domain  ali follow..  19  19......................................................................................................................................................................................LKKNEIRIYRLLVEKRRGMRIREIQRELGISERSVRTHVLNLYRRGLLKRQSGWLGYIYTPVS.......... 84
30 -11.000[K] KOG2593 Transcription initiation factor IIE, alpha subunit  ali follow..  10  7..................................................................................................................................................................KTFYDNYTPKNNNQKKSAKNGSGGIAVLVLDALTRRQWVREEDLAKELKLNTKQLRTILRYFEEQQFIMKVKVHMYSYCCLDYSQIYDVIRY. 116
31 -10.900[R] COG1672 Predicted ATPase (AAA+ superfamily)  ali follow..  18  134..........................................................................................IFLIICGSSISMMEKLLGYKSRRTGQINLKPVDFLHAREFLPGYSLEDGGSPAHLLEFDDSKTI---KENLLEYLRSDSLLYQDAFFVLREELEEPRNYFAIMEAVAAGKTSLGEIMNETGLSRATVAKYLSVLIELDFVKRERKSRRGRYYIKDNYFAFWFRY. 312
32 -10.800[K] COG4738 Predicted transcriptional regulator  ali follow..  17  17..........................................................................................................................................................................KMGEVEYEMVELLRNRPVALTLACLSKGDEISSQRIEMVSGLRQPEVSIAMRYLRENEWVDMREEKKNKLYKLTVQMETIIDTI. 111
33 -10.600[K] COG3682 Predicted transcriptional regulator  ali follow..  14  4............................................................................................................TAAEAHVMEALWRRSPLSADELVAEVSWGEATVKTLINRLLKKKAIKSERAEGKHGYRPRSAYVQAESQGLLDRLFDGQLAPLISHFAQHRPLKPDEVAK--------LKKLIDEMGE............................. 120
34 -10.500[L] COG2826 Transposase and inactivated derivatives, IS30 family  ali follow..  22  5..........................................................................................................FTAEEKASVFELWKN--GTGFSEIANILGSKPGTIF---TMLRDTGGIKPHERKRAVAH-----------------LTLSEREEIRAGLSA--KMSIRAIATALNRSPSTISREVQR................................ 97
35 -10.400[DR] COG5124 Protein predicted to be involved in meiotic recombination  ali follow..  11  1....................................................................................................MVTVKMKSDQKKSILLEIIRGSKSFFLESLGSKKGIVVNTIKEILQQLVDDGLVTAEKVGTSNLYWSFASEGIQKKKLRCKELMEECERMSQDICRKREYIENEKMSKHYTEERNELENKLNALMKI............................ 131
36 -10.400[DR] KOG3433 Protein involved in meiotic recombination/predicted coiled-coil protein  ali follow..  11  1....................................................................................................MVTVKMKSDQKKSILLEIIRGSKSFFLESLGSKKGIVVNTIKEILQQLVDDGLVTAEKVGTSNLYWSFASEGIQKKKLRCKELMEECERMSQDICRKREYIENEKMSKHYTEERNELENKLNALMKI............................ 131
37 -10.400[S] COG3177 Uncharacterized conserved protein  ali follow..  227..................................................................................................................PTAVFCSDRNRYYEMLSQADKGTEEDCTYVLSGISRE--LQKVDKLTSQQFLNENILFPAIQYSQKRQFINEDEAKILRFAVEQREFKAGDLAKLFSMNANQRTYQIKKLVESGFISPLEENSRIYIYLIRGVIYALRENG 376
38 -10.300[K] COG2188 Transcriptional regulators  ali follow..  11  11..........................................................................................................LYEKVKDYILANIGTGKDRKLNELVASLGVSRMTVHRALRELTAAGFLIRLQGVGTFIAPPRPQSTLIEINNIAAEIVERGNRHRSEVLVLETIMPTKELALSFEFPKRVAIYHSVVVNFEN........................... 138
39 -10.200[R] COG2522 Predicted transcriptional regulator  ali follow..  11  10................................................................................................................................................................................EYAAKNIFPSIRASIAKILVEEYKMSKYSVAKMLGATPTAVSYYISGKRGEKFVDRIIRDEEIYSIVREAASLLVEA.. 86
40 -10.100[K] COG1654 Biotin operon repressor  ali follow..  25  3.......................................................................................................................................................................................DTTVPLTLISLLADGEFHSGEQLGERLGMSRAAINKHIQTLRDWGVDVFTVPGK---YSLPE.......... 62
41 -9.800[K] COG3327 Phenylacetic acid-responsive transcriptional repressor  ali follow..  20  15.......................................................................................................................................................................................VPVSGTSLISSLYGDWLGSLAALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRR.. 93
42 -9.700[T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  ali follow..  16  75..........................................................................................................TLEDGRRQILNYV---PG----DLVGLQGTVMGEMEHSVEALSPVTLCVFERSRAFDLTWIAASEERMLDNHLLSIGRRTAIERAAYLIAF--PVTQQHVADTLGLSIVHTNKTLRKLVDRGLIRWIDK.................... 223
43 -9.610[K] COG1522 Transcriptional regulators  ali follow..  23  7........................................................................................................................................................................................DKIDRKILEVLQSNGRLTNLEVAERVNLSPSPCLRRIRRLEESGVIR........................ 53
44 -9.240[K] COG1733 Predicted transcriptional regulators  ali follow..  16  13................................................................................................................................................................................SMAAEVLCTRWTMVLMRELVAGS-TRFNDLRRGVKMSPTLLSQRLKELELAGIVERKGEKGIFDYRLTEAGRDLMGFWG 100
45 -9.220[T] KOG4603 TBP-1 interacting protein  ali follow..  10  1...................................................................................................MSKGRAEAAAGAAGILLRYLQERP---FGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDADLQVLDGKIVTAKVQSLQQSCRYMEAELKESSALTTPEMQKEIQELKKEGYRERLKNIKAATNHVTPEEKEQVYR.. 164
46 -9.220[K] COG1802 Transcriptional regulators  ali follow..  10  1..............................................................................................MLAGMGVIKPETLRYQVENVLRQAIMSTPGERLIELCETLGVSRTSIREALRRLEAEKLVSIVPHKG----------------PIVAIISRQEAAELFALRGLLEGFAAREFAQRATDVA-----HFAQAIQALRMAGMTKDRAKVLKAKTDLYDVLLDNC 147
47 -9.180[R] COG3413 Predicted DNA binding protein  ali follow..  11  98..................................................................................................................VVPPLRVANGVEKWFVYTPDEISQRDIKRQLEMDNATHISRIRELTLKSFLKVIFNMDFLSDFIDTMEALTDLQVKTIKQAYVNGRCTLGDLAKINGISKNAMAKRLKS-VEKKIFEC....................... 220
48 -9.100[J] COG4901 Ribosomal protein S25  ali follow..  15  37..................................................................................................PAKRTIQVLDEKVFQAIAKEVQNMRVITPYEIASKYGIKMSVAFKVLRNLKERGDLVLVAKGHRTEIYVPAKR.................................................................................... 109
49 -9.070[U] KOG2760 Vacuolar sorting protein VPS36  ali follow..  10  270..........................................................................................................LSRQLADFVRIPLEKAGGISLTDMYYHFNRARGT-----DLWQACTLWEKFDVPVMLRKFDSGVMVIQNKSHSDEEVMSRIRMLVTKTETLRVGVTASDAALTLKIAPAMAKEHLLSAETKGLLCRDMSPDGLRFYFN........... 409
50 -9.040[J] KOG2784 Phenylalanyl-tRNA synthetase, beta subunit  ali follow..  12  1.......................................................................................................................MTDPDR-LNQILQDQPYIEGFVQPSAADFSARASITEKELKGREHLWFQHLSSFEMTAETDVRSTENLPQQILDFLQESNEFNSIQLAQQWNLDHQKVIGAIKSLLANEGVLTTKDVTEKRLELTNEGVQFANE.. 135

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.