FFAS03 results for COG3485

Query: [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210`
#	Score	Template	Links and tools	%id	First	`MKTARRATDMVQPLGYLKETASQTAGPYVHIGLTPNFVGINGVFAEDLGTGPLYNDKAHGERITIKGRVIDGMGAPLRDALVEIWQADAAGLYNSPNESRGKADPHFRGWGRCPSNMETGEFIFETIKPGRVPFRDGRLMAPHVTLWIVARGINLGLQTRMYFSDEEAANAEDPVLARIEHRMRVPTLIGQREGDVYHFDIHLQGEKETVFFDI`	Last
1	-98.900	`[Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit`	`ali`	100	1	`MKTARRATDMVQPLGYLKETASQTAGPYVHIGLTPNFVGINGVFAEDLGTGPLYNDKAHGERITIKGRVIDGMGAPLRDALVEIWQADAAGLYNSPNESRGKADPHFRGWGRCPSNMETGEFIFETIKPGRVPFRDGRLMAPHVTLWIVARGINLGLQTRMYFSDEEAANAEDPVLARIEHRMRVPTLIGQREGDVYHFDIHLQGEKETVFFDI`	214
2	-10.200	`[P] COG5266 ABC-type Co2+ transport system, periplasmic component`	`ali follow..`	15	159	`..............................................EIVPLDNPANIHVGERFKV--RVL--RGEPLPNATVTA-------TFDGFDTSDRSKTHKTEAQAFSDSTDDKGEVDIIPLRQGFWKANVEHKTDFPDQSVCQKQANYSTLTFQI.....................................................`	263
3	-9.020	`[S] KOG3306 Predicted membrane protein`	`ali follow..`	17	30	`.....................................................PCSSGSEDSYTITGRVKIPHIAKFSNVKVIL-----------------------NGGQKITFLRPDGYFTFHEVPAGTHLIEVSGYFFSPVRVDVSARH..............................................................`	113
4	-7.330	`[M] COG4932 Predicted outer membrane protein`	`ali follow..`	11	1225	`..ETLVRENLVTDDNGEISVADLAPGDYKLIKAPTGYQLDATPVNFTIDFNQSEVEKVSKTNTAKTGTVVSATNAELADATFELRNESDT--------------------RENLVTDDNGEISVADLAPGDYKLIETKAPAGYVNFTIDFNQSEAAKVSKINTAKTGTVVLTKKDSATNAELADATFELRNESDTLVRENLVTDDNGEISVADL`	1431
5	-7.080	`[O] KOG0894 Ubiquitin-protein ligase`	`ali follow..`	20	26	`........................................................................DAKPATENILE-WHYIITGPPD--------------------TPYEGGQYHGTLIFPPDYP-----FKPPAIRMIT..................................................................`	75
6	-6.880	`[R] COG2351 Transthyretin-like protein`	`ali follow..`	12	4	`................................................................LTTHVLDTAGTPGKDLAITLFKIVN-NLRQPIKTVRTNHDGRCEAPLLEGEALQAGIYELD-------------------------------FAVGDYYRAAGVSLPDPAFLDVVT-----LRFGVADAGAHYHVPLLVSPWSYSTY...`	114
7	-6.740	`[O] KOG0425 Ubiquitin-protein ligase`	`ali follow..`	11	1	`................................................................MAQQQMTSSQKALMLELKSLQEEPVEGFRITLVDESDLHNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRTKMWHPNIYENG--DVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS........................`	126
8	-6.550	`[S] COG2512 Uncharacterized membrane-associated protein/domain`	`ali follow..`	17	37	`.........................................................DNNVTATVHGATYADTLELLNDTVISI-NSTPSQSMV----------------------AKDGIYSF-ELAPGDY..................................................................................`	88
9	-6.430	`[S] COG3656 Predicted periplasmic protein`	`ali follow..`	11	39	`...............................................AEAATSSKAWASGMQLDIQFSVATKASGRVKRPFVAVWIEDESGKTVRT-----TRDNGQLVSTVSSATRNPGTYAVALAPQGDYGREHGPYGLVRQKVSVGTSAFKKSLGADGDIEA.................................................`	188
10	-6.380	`[O] KOG0426 Ubiquitin-protein ligase`	`ali follow..`	10	1	`....................................................................MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRCEMFHPNIYPDG--RVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS........................`	122

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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