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Query: [C] COG3493 Na+/citrate symporter, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTNMTQASATEKKGASDLLRFKIFGMPLPLYAFALITLLLSHFYNAIPTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAISNVMDKSNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGIVIGLCFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTIANIFAIIFAALLDMIGKKYTWLSGEGELVRKASFKTEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKKILPSIGGVSIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIASIVFSMMVLast
1 -126.000[C] COG3493 Na+/citrate symporter  ali  100  1MTNMTQASATEKKGASDLLRFKIFGMPLPLYAFALITLLLSHFYNAIPTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAISNVMDKSNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGIVIGLCFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTIANIFAIIFAALLDMIGKKYTWLSGEGELVRKASFKTEDDEKAGQITHRETAVGMVLSTTCFLLAYVVAKKILPSIGGVSIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIASIVFSMMV 446
2 -13.100[E] COG0786 Na+/glutamate symporter  ali follow..  15  1..........................................MNQIISIGALESFLIAISVLFLGHFINAKLPILTKFNIPEPIVGGLIVACVITALHFHGIDMEF------SLPLQNVFMLMFFSTVGLAANYTQLIKGGAKVFLFLAVASVFIIGVGVSLAAGLGLDPLLGLIAGSITLS-GGHGTGAA-WANTFAENYGLANTLEIA--MASATFGLIIGGIIGSPVAQKLVDKHGIESEYGHSRFPELVTYNEYEEDKVTAKKVIEILFILLICVTGAKYLEAWVKTFERWLMIPDFVYALFIGVFITNLLEVTKLRKVDAETVDIL--GTVSLSLFLAMALMSLKLWNIFDLALPFLVILAIQSVVLGVFCYFVTFKVMGANYDAAVISAGHCGFGLGATPTVMNMGSVKRFGPSPQAFMVVPIVGAFFIIVNLIILQGYI 404
3 -12.500[S] COG5505 Predicted integral membrane protein  ali follow..  13  7...............................................SDDVWVLWGFIAVWAAVSIGLEQRFKWASAV--SGAIIALAGAMVFTNVGVLPVES----------DTVWSYVVPLAIPLLLFQINVRQIFKESRRLLFIFLISSVGTVLGSILAFFLLKQHIPYL----IGGMISASYIGGGVNFAAM-AAKFETPGEYVSATVVADNFMMALLFFILISIPALKWFQRHYAMPFEEKVKADGNSGNSAESRKDISLKDIAFNAGAAFALVAVSMKVSGYFFSHPLLTGTLGDQYLVLTSLTVLIIFLFPRFFERLNGSQE--LGTFLIYLFFVVIG-IPADLRLIVTN-APLILLFVFIIAISNLAVSLAAGKLFRVRLEEILLAV---NATVGGPTTAAAMAIAGWRELVAPIMLVGTLGGNYVGTFMGNWFSSFL 396
4 -9.470[P] KOG4505 Na+/H+ antiporter  ali follow..  12  5...................QVEISKPHLAYAIIGGFTSLFMLCSLIIKEKLLGEATMATATGLIFGPYVAKLFVPTSWGNTDYITEELA----------------------------RVLLVVEVFAAGAELPRAYMLRHWRSMFVMLLPVMIFGWLVSTGFMLIPRLSFLESLAIAACPVLASGCNDGAIPFLYLAIYLIIEKPARILYECTFGCVLGAIIGVIARKMIKFS-----------------------ERRGLMDRESFLVFYFVLALFCGGIGTI-------------IGVDDLLVSFCAGAAFSWDSWFSKKTEESHVSNVIDLLLNLSFFVYVGAIMPQFHMPHMDLSVWRLVVLAICILIARRIPAVLL-FKSFVPDIINWREALFAGHFGPIGVGALYTCLVARAELEVHSTVPEPNDAIENPEIPNW..... 406
5 -8.330[P] KOG3826 Na+/H+ antiporter  ali follow..  11  24.........................TTTILIFISLYISIITLLGENFTVRSIFVIFILLVAGIFAAKISKALRL-------PPLFGCLALGIIIKNITVFDQFFVFPPFVETMIRKVALVMIIVRWG--LATDIHFLYENALMPVTIGLVTAIGEIIAVTIASFILNISFVMSIFC----ILVTVSPAVTVPAMINFKEKQLGSLKRIPENILAICCVDNLFCVILFMVLSSI--------------------IFTDAPIATTILLNAGSIVFGCIGGIVLGWILWRFPRSDAPHTQFARITLLGTICIAVVIGTYLKEKLECVESTYKYIWDSFALPLLFICLGMK-FDCSTLTWEIVFLCIAVIAIGLLVRTILVMLVTLSSHI-NFKEQIVVALSLLPRATFQ-LAPTLLLMATPFPDMAKDAALILKAAIVLITAPIFDILL 459
6 -6.640[P] KOG1650 Predicted K+/H+-antiporter  ali follow..  11  56.................................................QMSVIIITSRLLYRLLKPLKQ--MISAQVLAG----IILGPSLFGQSSAYMQMFLPISGITLQTLSNLGFFIHLFLLG--LRIDASIIRKAGSKAILIGTASYALPFSLGNLTVLFLKNTYLPPDVVHCISTVISLNAMTSFPVTTTVLAELNILNSDLGRLATNCSIVCEAFSWIVALVFRMF---------------------LRDGTLASVWSFVWVTALILVIFFVCRPAIIWLTERRSISIDKAGEIPFFPIIMVLLTIS-SLPDGPPLGTGLTTKLFATSLMLPCFISISGLQTNFFIIGESHVKIIEAVILITYGCKFLGTAAASAYCNI-QIGDAFSLALLMCCQG---EIYTCVMWKDEKVLNTECFNLLI---ITLLLVTGISRFLV 441
7 -6.610[R] COG3180 Putative ammonia monooxygenase  ali follow..  13  26......................................................WCLLALLSAVFAGVLEMIGIPAGLLMGPMIAGALVGMNGGTIR-LPRQLFF---------------CVQVVLAMMIAASSPDLLVTFSGNWLLFLAIILSVIGVSTLCGWTITRMGILPGTTAIWGSSAGAASTMLLMADAYGADARLVAFMQYLRVVFVASTATIVSHLWVSG--------------------------VEAETATHWFAPIAGLPFFMTLAVGIASGILGKIL-------RVPAGAFLFAIGSALNITGTLTIELPQWLLALSFAMLG-----WNIGLGFTRAILAHARRAL-MPTIVSIVVLISFSGLLALLLIKVAGIDPLTAYLATS------GGLDSIAVIAASSNVD-LPFVMALQTARLLIITLIGPALARFV. 358
8 -5.970[S] KOG2490 Predicted membrane protein  ali follow..  11  157......................................................................ATPYIEKTFLFGWFVSV--DSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNSSPNRSLPRSRKIDLLKLLLIFSTSILIRK----------------------------------IDVSRLYHIIRAQA-------SIRFYVLYNVLEIA---LCCALGQDVLD-----CLFSNHILSFNFWNPAGWMTFFYYFAISLAYMVLHTLVLLYQIITLNVTVNSYSNAVLALLMSNQLVEIKGAVFKKFEK--ENLFQLTCSDVVERFQITIMVIIIFLRNLAELLLAPFFWVIGSELFVDWLKHAFIIKFNYIKPIYSRFTDVLCH-------DYVASGAQLTQTVTGCSQQVARRMGLPVLPLVCVFIRTSM 494
9 -5.930[P] KOG1966 Sodium/hydrogen exchanger protein  ali follow..  23.........................YVITTWLLVASLAKILFNLMKPLSKWLPDSSLLIIVGLGLGYF---------------------------------NQTTLSGVHLDSHAFFLYLLPPIIFDAGYFMPNRALFKNFDSVLVFSVLGTLWTFAIGGSLLIMSKYQLFTMPFTTFEILVFSALISAVDPVAVIAIFEEIHVNEFLFINVFGEALFNDGVTVVLYQMFKSFALIGSENLSPWDYATGAIATSLATKYTQGIKILAPVFIFLLPYMAYLTAEMVS-----------LSSIIAIAVCGMLMKQYI-ITEAATNSVKYFTKMLAQCSETVIFMFLGLSTLTSEHHVDIFIGATLVFCLIYRAIGIIVQCFILNKFRAKKFEVVDQFILSYGGLRGAIAYGLVVSIPASIQAKPMFITTTIC--FTVFLQGITIRPLV 423
10 -5.870[FH] KOG2466 Uridine permease/thiamine transporter/allantoin transport  ali follow..  11  146.................................CWITIWIGYGFVGAFVVLASHLSFPISSRASFGIFFSLWPVIQAYIAATPVSLMLKSIFGKDLQDKIPDHFGSPN--ATTYEFMCFFIFWAASLPFLLVPRHLFTVKAVLVPFASFGFLIWAIRRAHGRIALGSLTDVQPAFLRSLMGCMANFSTMVINAPD-FSRFSKNPNSALWSQLVCIPFLFSITCLI------------------GILVTAAGYEIYGINYWSPLD---------------VLEKFLQTTYNKGTRAGVFLISFVFAVAQLGTNISANSLSCGTDMSAIFPKFINIKRGSLFCAAMALCICPWNLMATSSKFTMALIFLSSIAGVVCSDYFVVRLTHIYSHQKAYLCGVAPCLPGFIAEVGAPAIKVSDGAMKLYYLSYWVGYGLSFSSYTALCYFF. 577

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.