FFAS03 results for COG3495

Query: [S] COG3495 Uncharacterized protein conserved in bacteria, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180`
#	Score	Template	Links and tools	%id	First	`MRRFPFARLLLLALLSSPLVHAELPETDWLELMPPADRKALEEMPDIVHDTPEAAGTFTSKGGLKQSDRKMPAVMYSAKTVASLDGKAIRLGGYPVPLENDAKGRVTEFFLVPYPGACIHVPPPPPNQIVLVRYPQGLKLTDIYTPLWVSGTLKIEQVSNDLADAAYAIDKARVKVVEEADL`	Last
1	-81.200	`[S] COG3495 Uncharacterized protein conserved in bacteria`	`ali`	100	1	`MRRFPFARLLLLALLSSPLVHAELPETDWLELMPPADRKALEEMPDIVHDTPEAAGTFTSKGGLKQSDRKMPAVMYSAKTVASLDGKAIRLGGYPVPLENDAKGRVTEFFLVPYPGACIHVPPPPPNQIVLVRYPQGLKLTDIYTPLWVSGTLKIEQVSNDLADAAYAIDKARVKVVEEADL`	182
2	-16.500	`[S] COG3689 Predicted membrane protein`	`ali follow..`	9	101	`.........YHFPLSEGTDLAIQTSEGTTSQYLKPDTSSYFSKSAYEKEMRTAADKYLSQDSIQITNENYMEVMEAIYDYPDEFEGKTIQFTGFVYN----DPSHANSQFLFRFGIIHCIADS----GVYGLLTKGNTRQYENNTWITAKGKLVNHYHKELKQNL--TLEIDSFTKVDKPE.`	263
3	-11.500	`[S] COG3111 Uncharacterized conserved protein`	`ali follow..`	11	1	`MKKFAAVIAVMALCSAPVMAAEQG----------------------------GFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIV-----ERISDDLYVFKDASGT------------INVDIDHKRVTVTPKDTVEIQGEVDKDWNSVE-------IDVKQIRKVN....`	129
4	-10.400	`[M] COG3065 Starvation-inducible outer membrane lipoprotein`	`ali follow..`	16	8	`RNHKWMYGWLGLGALLLSGCVTIPPAIQGTTATPLQDLNLIRSAP------------------------------------KLFIGQEARFGGTVVNVKNEPNRTRLEIASVPLDSGARPILGEPSQGRVIAYVDG--PVDFRGHLVTVVGPIV-GVEAGKIGMTPYNIKATGYKRWHIAQ.`	155
5	-8.460	`[C] KOG1563 Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase`	`ali follow..`	9	73	`....VLGLMFAMPIISFYLGTWQVRRLKWKTKLIAACETKLTYEPIPLPKSFTPDMCEDWEYRKVILTGHFLHNEEMFVGPRKKNGE----KGYFTPFIRDDTGEK---VLIE-----------SEEKVAPDSRNLHHLSLPQEEHLKVVCLVRQWAKKDPNSRLWQVPDIYDMAR......`	240
6	-8.380	`[P] COG4772 Outer membrane receptor for Fe3+-dicitrate`	`ali follow..`	12	1	`MHKKVLLALTASLICQESLFAKDKDKKDRSDYSGQVNLGYSGITAPKSWQDEEVKKYTGSRTVISNKALTQQANQSIEEALQNVPGPTIQIRGF----GAGGSGHSDATLMLPYAHIELDIFPVTFQAIDRIDVIKG-GGSVQYGPNTYGGIVNIITKP.......................`	185
7	-7.610	`[O] COG2332 Cytochrome c-type biogenesis protein CcmE`	`ali follow..`	16	41	`.....................................................................GEILYGKRETQQMPEVGQRLRVGGMVMPVQRDPNSLKVTFTIY------------DAEGSVDVSYEGILPDLFREQGVVVQGELEKGNH----------ILAKEVENYTPPE.`	138
8	-7.590	`[C] KOG3456 NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit`	`ali follow..`	8	1	`MNRLLQQSVSRGPLAVRASSTITTKPPTPNQITKNNAQFDKVTHTGQAWDQSDYRLQRFDISKKSVNPNVAMHLIDQRPPEDCGDKRVVFCDG---PINLDKPGVHA----------CGYCG............................................................`	119
9	-7.210	`[R] COG4085 Predicted RNA-binding protein, contains TRAM domain`	`ali follow..`	11	283	`.................................................................................DQYEGRLVKLTAFVSSIPSSPAGGGYNVTMIDD------------HHAMTLRVMNETGVINELDEYEFTGVLS-------------RYQTFQLLPRKSADL`	362
10	-7.110	`[P] COG4454 Uncharacterized copper-binding protein`	`ali follow..`	10	1	`MTRLKLALLLTALATPAFAGGTHSGGDNVMAIGEPGDKSKVTQTIQVTMKETPDGKM-------------------------MFTPAKFEFKGKTVRFAVKNVGELDHEFILDEQKA-----APGESGEIVWKFTNDGMFEFAHYEAGMRGDLKVSAK........................`	158

FFAS is supported by the NIH grant R01-GM087218-01

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