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Query: [S] COG3767 Uncharacterized low-complexity protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNKNIAAALAGALSLSLAAGAVAANKPASNATGVHKSAHGSCGASKSAEGSCGAAGSKAGEGKCGEGKCGATVKKTHKHTKASKAKAKSAEGKCGEGKCGSKLast
1 -79.800[S] COG3767 Uncharacterized low-complexity protein  ali  100  1MNKNIAAALAGALSLSLAAGAVAANKPASNATGVHKSAHGSCGASKSAEGSCGAAGSKAGEGKCGEGKCGATVKKTHKHTKASKAKAKSAEGKCGEGKCGSK 102
2 -13.400[S] COG5291 Predicted membrane protein  ali follow..  10  246.TSGDSMASLTDMADTKSSTENSAVTEESQCCAESFKDSSVVSSQKSMAVSTVVGSSTEAKNNYLDFTEALCDKEVVAEQNPESQSNEEWDEKWGDSDNESE 346
3 -9.190[K] KOG2478 Putative RNA polymerase II regulator  ali follow..  5  432.SGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD. 531
4 -7.350[S] KOG4200 Uncharacterized conserved protein  ali follow..  6  3.TDSSSSSSTSSLESCEKRSTVGENDELEVSLVDFETIEIDVDVTDSANSSIDSISEKGEDFEVIDSCTDTEKNMGENDSGRVDPFTVTTLNDERGEIYTGP 103
5 -7.340[S] KOG2890 Predicted membrane protein  ali follow..  4  256ARMGVCKRQVRHVDLHSLQSGSVGINLPALENSAKDSERRRQKALKELNDRLNKTRTAEVASYGNWDDGDDDEPTEVTVVAPPPVSNVHSSKPAMDKES... 354
6 -7.100[S] COG5604 Uncharacterized conserved protein  ali follow..  6  23IKKKDTDKGIRQKHSKKEGKDETLKRDVEKFIQNVNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGSSRKRKNLPNENTQDSTSESSEEEEDGLESYQK 124
7 -7.100[J] KOG2256 Predicted protein involved in nuclear export of pre-ribosomes  ali follow..  6  23IKKKDTDKGIRQKHSKKEGKDETLKRDVEKFIQNVNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGSSRKRKNLPNENTQDSTSESSEEEEDGLESYQK 124
8 -6.810[C] KOG4665 ATP synthase F0 subunit 6 and related proteins  ali follow..  5  9.ENSLNSSSTIDTSSASTIDTSFASQCTNFSSGQASGTQDTHAGIFEDCPGLNPNDERVVELQCEIREKCEALTQDPEMGLILGEALHAESDNVP....... 102
9 -6.750[S] KOG4610 Uncharacterized conserved protein  ali follow..  9  415.KDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSS 515
10 -6.400[P] KOG3788 Predicted divalent cation transporter  ali follow..  7  1MKGGGGIGDGKKDYQSAVHEGLTTFDQLGIALEDVGKSMDAETATPGGSLFSRVMNENSSLKSRTYDHSNDLVNMSVIPAESSYV................. 85
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;