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Query: [U] COG3846 Type IV secretory pathway, TrbL components, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKRIPVMPVLALALLLFAAQAQAQAPVDSVGLFDNILGRFHQVADTWSGEIVRYASWLFWSLALLSMVWTYGMMALRKADIQEFLAETIRFFAVMGFFWWLLINAPAMSTAIIDSLRQIAANATGLGNTLSPSGIVDIGFDITSKVIDDSSIRSPVNSAVGIIASTVILIVLALIGVNMLLLLVSGWLLSYGAVFLLGFGGGRWTSDIAISYYKTVIGLGMQLFAMILIIGIGKSFIDQYYAAVSTGAITMKALLVMLVASIVLLALVNKIPPMFASIVGGGGATAGIGNFGAGAAIAAAATGAAVAATAGSALAAGLSSAGGGVSALKAAFQSAQQNMASGGGSGSGSGSGGNSAGVSSGGSSSFMSAMGTTGRFAADMGTSLAKGVGQVAKDKAGSVIASAKERVADTTGGKVASAIRNSMDAASGQNDFKGDSLAGAAQRGSETAMNDEVAAFVNKGKQHELast
1 -76.800[U] COG3846 Type IV secretory pathway, TrbL components  ali  100  1MKRIPVMPVLALALLLFAAQAQAQAPVDSVGLFDNILGRFHQVADTWSGEIVRYASWLFWSLALLSMVWTYGMMALRKADIQEFLAETIRFFAVMGFFWWLLINAPAMSTAIIDSLRQIAANATGLGNTLSPSGIVDIGFDITSKVIDDSSIRSPVNSAVGIIASTVILIVLALIGVNMLLLLVSGWLLSYGAVFLLGFGGGRWTSDIAISYYKTVIGLGMQLFAMILIIGIGKSFIDQYYAAVSTGAITMKALLVMLVASIVLLALVNKIPPMFASIVGGGGATAGIGNFGAGAAIAAAATGAAVAATAGSALAAGLSSAGGGVSALKAAFQSAQQNMASGGGSGSGSGSGGNSAGVSSGGSSSFMSAMGTTGRFAADMGTSLAKGVGQVAKDKAGSVIASAKERVADTTGGKVASAIRNSMDAASGQNDFKGDSLAGAAQRGSETAMNDEVAAFVNKGKQHE 464
2 -14.700[U] COG3704 Type IV secretory pathway, VirB6 components  ali follow..  12  545................VHFSTSLKVGSFTIKVMNPLLQLFKTKVQGAATSIFKNMVCYIKAILILYVMTYGAMFLLGFAKIN--QKELVIRIAKIGVVSGLMNGNNYLFDAITNFSDSIIANMSGYSLF-TSTNTISNPFMFLDAVMSKIGLSGIIYFIITFIAVCIVIITALRAVAVYIMAFMATCILIGIAPLFISFLLFDFTRYLFDNWVRFTIRYMMEPVVMMAGIIVLTQLFTIYLDFVLGYSVCWKCAIKIPFIGTILPIALLNVPIFCINWFAPWGMDYMSGMMGVNMQNIVALVIIAYGMYGYVEFSGRIVVKLTSAVGPSATEIGGKMSHDAGQKVLSSIGMDDKTRQGITGRAEARLKQRNKTLDQAEKNRKNTQKEGGEKTNEEPPKPETP.............................................................. 965
3 -13.400[R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)  ali follow..  8  767...................................................................................................................................................................................................................................................................................LSTLANTRERRSEYGQKRNVSGSRLAATPASKRKLSSKDVEQAADAPEVLTHSDNAVDVGIIDDECGGFGAVGVMNGVASPVANNSEMDTEAEVEAEPTATKAITIHCQQPVTTPVAAAATANERLPGVAPHRRGPRRADRREEELVASAPGYRCRPSMRGADAGAAAAAAAAPTHPHPHRPPPPPPPQ 955
4 -11.600[TU] KOG3895 Synaptic vesicle protein Synapsin  ali follow..  10  792...............................................................................................................................................................................................................................................................................TGTITTSVTTNDWRSAIGMRSASVYSAPAAVTTVLPGDTSGYDSNSIASQGEGLNNPSDLPSYTRPSYSRSESNASKHSDLDVIFGDSKTTPASYGNGKYTRAAGSISDADMIFGGPPSNYKTDRFGASKSMSMTSGGVGSGNGSGSGLGGYKIYDSIQNAAFSDFSDSGSMSSIGSHTKRWSASKEEDDELD 984
5 -10.300[O] KOG0802 E3 ubiquitin ligase  ali follow..  10  1MGIKYLPVSVASTALSFVGLQVWTELSLDRLRADGLIAKNISL-GDSEHALELLLGSYFTIALLTNFVLNVYILLLYDVETKKLVERLANYIIYKGTFLPLVIPPTIFVLCTLKMFQALARRLERLNASPSST-VLSVDMFWIKLSLMTYNTIGSAVYLLLLFEPCSIAFETLQALLIHGFQLLDMWINDIFGSLLEWKGLLNRNLGFFLDMATLVMALGIAFHLVDAVL-ALGALHAALPDATSEELRAYDDECAIC-LGCLRSWLVYSCPTCRKPLFVGRTENEVNPRTVEVSSDEQLARQLERQNNPVHALATGLFPAEVPDSVENDTSRNLGLDPSWLQTWSSQGSDVAGPSTTSRTVGLGRVQMMMRHLASVGESYAQTALDDAAWSLWPMNPSQASTSSTTVPPGNGGRTGGLHLRTVSNTTNESLTNILAMAETVREVMPHVPDEIIFQVNFKCILD 592
6 -10.200[S] COG5291 Predicted membrane protein  ali follow..  8  1................................MPSIPQMNNTFLLGQMLRVPPITRYMTLLISAVALLVYV-----------------AVSPYSLYYSPLFLKRLEIW---VFTSFLYFG----------------KPTLDMFMHVVFLYRYSRMLEEGCVNTSEYFWLILVISSVLFAISNIYGISALGTSFSATITYIWTKRNPRAIVQIF-GFISFPAFYLPFILPG----------FMLLSRRSISIDDVLGIVVGHLFHYF-ILSTPCWVKKLFNEHPSSCCKARKGITIREGRERHERNMGYSNASTTSGDSMASLTDMADTKSSTENSAVTEESQCCAESFKDSSVVSSQKSMAVSTVVGSSTEAKNNYLDFTEALCDKEVVAEQNPESQSNEEWDEKWGDSDNESECS................................................ 348
7 -9.740[Z] KOG4462 WASP-interacting protein VRP1/WIP, contains WH2 domain  ali follow..  8  50.............................................................................................................................................................................................................................................................................SAPVVGGGVVGERKSNTPKSFAAPPVPTGAPSLPTSSNNTQQAEERPSMPALGGLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGP. 243
8 -9.640[R] COG5236 Uncharacterized conserved protein, contains RING Zn-finger  ali follow..  10  403........................................................................................................................................................................................................................................AEKLLESYKLLFTKPNADVYLLIHNLAETF-----SSKYNNLNAIYEQREQTLARQTSLPSLSSDSSLSMSIGRGHWGGTNDGGSAGAALGVRNIKNLPTLKSPSASYDPFATTVKKNTLRPVQNIKRTTPQSVSYRTSTNTVAFSPTYLESKKGSSSTSLNNSKDKLKSLNLPQLPPPKPKVQIPGLNRPQIADPKQWGKKSSTQDTNVHDNLRELNTTSGGNKKKGKQKQ 632
9 -9.100[S] KOG4610 Uncharacterized conserved protein  ali follow..  10  1MAKIISTIKAILTRIIF--------------SAHSLLAIWQVVALKSDIIY--WALCGPLLLLLLEGIFTIMI---KTQEWRWFCPSVFLYLSSIVPAIWLLE-------DKVARRVGNMTSTNSTVYSPSNYSIPVGNTTIFITSTNSSGVPPVATLLGQAGVTLSVTPDTWTTLIEQFLM-----LILIVGRWLLPKGDL--TRDQLSQLLLVYIGTAADIILVFLTLGIWSWSLMQFTIVLSATRGRRPRGSGS-VWGIVLNVILQDAPFLT--IIFQYKIINYMNVFFTCKNSLVIILQLYRLYVVNAEFWKNRRESRMAKSRQFQSRRKVQDADQNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESS 468
10 -9.030[R] KOG2888 Putative RNA binding protein  ali follow..  10  26...........................................................................FWGNESSMNLNALILANIQSSSYFFKLKTYHEVVDEIYYQVKHMEPWERGSRKTSGQTGMCGGV-----------RGVGAGGIVSTAYCLLYKLYTLRLTRKQILLNHTDSAYIRALGFMYLRY-----------------TQPPGDLY----------DWYEDYLQDEEEIDVKAGGGQVLTIGQMVYQFMTKLFPRIPVPIQKQIEKRIEQYCREQGVTVHQLSTGRSTAGTGGGPGAAGQDADYQDYPEGGVERGSGGRGGGQAGSRSNAYPQPNNYRNDYDERDYYAAASGSSYGRGRGGYEDYPPAPLPPQMPYGERERERDRDRDKNKDYDRHRSKHKKKHNHRQSSRSRSRSRSRSRHRSERHERKRDGGGYERSSKSRHNE 388
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;