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Query: [E] COG4126 Hydantoin racemase, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLIKLINPNTTSAMTELMGDTARTVAAAGSDIVLATSRSGAASIEGHYDEALSILGVIDEIARGKPADAYIIGCFGDPGLLAAREITASPVLGVAESAMHAATFVATSFSIITTLERTRIISERLVRSYGMQNHCRSVRATDVPVLELERSSSTADAAILAECEKALIEDRAQAIVLGCAGMSNLVERLQHRLGVPVIDGVAAAVKFAEGIVGMGLRTSKVGDLAYPLPKAYAGKLAEYAPASLKLRNNDEPSALATAIGSLast
1 -92.400[E] COG4126 Hydantoin racemase  ali  100  1MLIKLINPNTTSAMTELMGDTARTVAAAGSDIVLATSRSGAASIEGHYDEALSILGVIDEIARGKPADAYIIGCFGDPGLLAAREITASPVLGVAESAMHAATFVATSFSIITTLERTRIISERLVRSYGMQNHCRSVRATDVPVLELERSSSTADAAILAECEKALIEDRAQAIVLGCAGMSNLVERLQHRLGVPVIDGVAAAVKFAEGIVGMGLRTSKVGDLAYPLPKAYAGKLAEYAPASLKLRNNDEPSALATAIGS 261
2 -16.000[Q] COG3473 Maleate cis-trans isomerase  ali follow..  16  42.RIGLIVPSSNTT----MEPEMWMMAPEGVSIHTGRVPLEKVSVEELLKMEEYSAIEAEKLATAG-VDLIVYGCTTGS-ADKLSSASGVQVVTTATAVVEALKALGSRIAVATPIEEVNKREEEFLRHHGFD--IVDFKSLGLL----NLDIGRVPPWRVYRLARSLSIEGADAIFISCTNLVEVIGLLERDTGLPVVSSNTASMWMALKTLGIREAGFKAG....................................... 266
3 -15.800[M] COG0796 Glutamate racemase  ali follow..  17  39................SVYQEIRQLLPDLHYIYAFDNVAFPYGEKSGEFIVERVLEIVTAVQQRHPLAIVVIAC-STVSLPALRERFAFPVVGVVPAIKPAVLTRNGVVGLLTRATVHASYTLDLIARFATDCKIELLGSSEVEVAETKLHGGVVPLEVLKKILHPWMREPPDTIVLGCTHFPLLTEELAQVLPTRMVDSGAAIARRTAWLIS................................................ 244
4 -14.200[M] COG1794 Aspartate racemase  ali follow..  13  2MKIL-MSWESTIPYYRMINQHVKAQLGGLILYSVDFHEIEQLQAKGDWQTAAQLLSNAAISLKHAGAEVIVVCTNTMH-ADDIEAACGLPLLHIADATAVQIKQQGDKIGLLGTRYTMEQGFGRLTEKHGIEVITPDDTDREAVNRIIYEE-SETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVN--AQDASVPVFDTTAI---HASAAADYALQ............................................ 231
5 -6.950[S] COG1433 Uncharacterized conserved protein  ali follow..  15  2...........................................................................................................KICISACGKDLDSEVDP---QFGRCNYFVIIEPKVGSVTSIKNPGSEAPSGAGIRAAEAVVGAGIDILLTG--SVGPNSFSILSEAGVETHYGVRGKVAFALHEYQSG.............................................. 104
6 -6.570[H] COG4056 Methyl coenzyme M reductase, subunit C  ali follow..  8  3.................................................................GKCTHVVDCRETMGMGE----------GGGIAQRGTFAQCGSEVLAVAMSPGRRHIITFALREANIMTSTIVLNAGAGVPQDAPSAGAGSLFGLTPAEVEQMKRHKLLVVHLGG--ITYKARLILRNVDRPCI............................................................... 133
7 -6.420[C] COG2048 Heterodisulfide reductase, subunit B  ali follow..  11  17KKVAYSLEGAARAYDVSTRIVAKELGLELDYLEDYNCCGAMETKNVSFWGTMLLNARNMSLARRQGHNVIVAPCYHEAGPEKVKEKTKKPLRGL-KVASYYGCLYTRPHFYARTYSHLAPYMEALLEAAGATSVEIEPMHTQCCGGPHSLSDEEVSEKFVMMILQTAKRNGADIIATECPYRHRLMLKGVPDVDVPAAY-------FTQLLLAFGYSVNDVK....................................... 313
8 -6.390[H] KOG3243 6,7-dimethyl-8-ribityllumazine synthase  ali follow..  13  18IRVGIIHARWNRVIIDALVKAIERMASLGVEENNIIIETVPGSYE-----WGTKRFVDRQAKLGKPLDVVIIGVLIKGSTMHFEYISDSTTHALMNLQEKVDMPVI--FGLLTCMTEEQALARHSMHNHGEDWGAAAVEMAVK...................................................................................................................... 163
9 -6.380[H] COG0054 Riboflavin synthase beta-chain  ali follow..  15  29AKVAVVIARFNSFINESLLEGAID------ALKRIGQVKDENITIVRTPGAYELPLVARRLAESKKFDAIVLGTVIRGGTAHFEYVAGEASSGLGKVAMDAEIPVA--FGVLTTEEQAIERAGTKAGNKGAEAALTALEMVNL...................................................................................................................... 166
10 -6.170[R] COG4123 Predicted O-methyltransferase  ali follow..  16  33.................................................................SVDSVLLSRFPR--FPKKGLIVDF--AGNGAVGLFASTRTQAQILSVEIQERLADMAERSVRLNGLEEQMYSNLNESEHYLLARHEITTNLEEICRSAQSILKSNGRLAMVHRPDRLLDILDTLKR...................................................................... 188
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;