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Query: [S] COG4197 Uncharacterized protein conserved in bacteria, prophage-related, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100
# Score Template Links and tools%idFirst MTLKEFIKSLRVGDAKKFAARLGVSPSYLSQMASGRTAISPTRALMIESATEGQVSRAELRPHDWELIWPEYASGIRLGQTHVVHAEGDCSACLSDGVDSLast
1 -57.100[S] COG4197 Uncharacterized protein conserved in bacteria, prophage-related  ali  100  1MTLKEFIKSLRVGDAKKFAARLGVSPSYLSQMASGRTAISPTRALMIESATEGQVSRAELRPHDWELIWPEYASGIRLGQTHVVHAEGDCSACLSDGVDS 100
2 -16.100[K] COG1476 Predicted transcriptional regulators  ali follow..  13  6....KVYRAIHDLTQENLAEKVGVTRQTINAIEKGKYDPSLDLAFKLSRLFKASVE............................................ 57
3 -15.000[K] KOG3398 Transcription factor MBF1  ali follow..  16  81TELKKAIMQARTDTQSQLAQIINEKPQVIQEYESGKAIPNQQILSKLERALGAKLRGKK......................................... 142
4 -14.400[R] COG2522 Predicted transcriptional regulator  ali follow..  14  23.SIAKILVEEYKMSKYSVAKMLGATPTAVSYYISGKRGEKFVDRIIRDEEIYSIVR............................................ 77
5 -13.800[K] COG4800 Predicted transcriptional regulator with an HTH domain  ali follow..  25  21.TLSAVIKEDLNLTAVDFAKKANIPPSTLYKILSGNRDPNIKTLRQIVKTIR................................................ 71
6 -13.500[P] COG1513 Cyanate lyase  ali follow..  11  21......SKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLD--LDEDSI........................................ 72
7 -12.800[K] COG1709 Predicted transcriptional regulator  ali follow..  22  31.TMRK-WREIFGISQTELADYLGVSSSVISDYEGGRRKPGASTIRKFVEA.................................................. 79
8 -12.500[K] COG2944 Predicted transcriptional regulator  ali follow..  16  91......LRENNHVSQPVFARYLNTSESTVQKWETGAKRPSGPALKLLS.................................................... 132
9 -12.500[K] COG1813 Predicted transcription factor, homolog of eukaryotic MBF1  ali follow..  14  116......AIRKSGLSYEELSHKVGLSVNLLRRIAHGEYTPTIEEARKLERFFKIKLV............................................ 165
10 -12.500[K] COG1395 Predicted transcriptional regulator  ali follow..  18  131.LLKK-ARTDQSMSLGTLASMVGVSRRTISKYEEEGMDASIDVVLQLEDIFGVELA............................................ 184
11 -12.400[K] COG2932 Predicted transcriptional regulator  ali follow..  21  9.RLFEIAKEQGVLKPADIAERLNISQQALKNWESRG--IAAKALPEVAKAFG--VSETWLRTGEGSRTAPVLIDPDLPHEVKDIHRPMTWSSNDPLPDDD 103
12 -11.800[K] COG1396 Predicted transcriptional regulators  ali follow..  26  8......LRKKLGVTLETLAEKTGLTKSYLSKVERGLNTPSIAAALKLAKALNVQVE............................................ 57
13 -11.500[S] COG5606 Uncharacterized conserved small protein  ali follow..  16  31TIINNWIEQQG--SQAQAASALGVTQPRISELARGKQIFSIDKLITMMAHAGLHIQ............................................ 86
14 -10.800[R] COG3093 Plasmid maintenance system antidote protein  ali follow..  23  14MLKVEFLEPMGI-TSKALAEAMGVHRNTVSNLING-GVLTAPVAIKLAAALGNT-------PEFW................................... 69
15 -9.790[K] COG3423 Predicted transcriptional regulator  ali follow..  11  12.DIIAGLRKKGT-SMAAESRRNGLSSSTLANALTRP---WPKGELIIAKALG--TEPWVIWPSRYHDPRTHEFIDRTRLMRARNKNKQNVE......... 95
16 -9.280[S] COG4344 Uncharacterized protein conserved in archaea  ali follow..  11  18LRVLKHFTIAHVDYAKNITRYTEIPQMRVREYLKRLKDLGL-----LDYYTNTSIKRTE......................................... 71
17 -9.160[R] COG2842 Uncharacterized ATPase, putative transposase  ali follow..  27  1MTLINKLKSDSQITQAQLAREAGVNAGALSAYLNDN................................................................ 39
18 -9.130[K] COG5499 Predicted transcription regulator containing HTH domain  ali follow..  12  81IAVIRTLMDQYGLTLSDLPEI--GSKSMVSRVLSGKRKLTLEHAKKLATRFG................................................ 130
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.