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Query: [S] COG4269 Predicted membrane protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MADNASQNKSLHRVAFKGEGGEYFSIWLVNLLLTIITLGVYSAWATVRRRRYFYGNTELNGDRFDYHAEPIEILKGRLMVIGGVILFYILLAIAPTLGLLVALVLLALIPWIIIRSWRYNAIMTSYRGVRFNYHCQTGQAYWALLFCPLLLILGLYAVIIVMAMFLGSVASTPSTAITLIVVSAILLVPLLAVINGIVSTLQHSLYVNNLYFGNSSFISTLKKSAFIKIAFFSVLIFIPFFFVAMMFAGAFFADLFQSALNGSIANENKTAMLIIQNASNLLFMMLMLLLGTMVSSSYRIVAQRNYLFSQTTLQGDIKLRSSMKLLSYMGLLMTNSLITVCSLGLATPIAEVRHARYMANATEIEGDLSLLNIHAHQDTANSALAEEAVQALDLGTGFLast
1 -160.000[S] COG4269 Predicted membrane protein  ali  100  1MADNASQNKSLHRVAFKGEGGEYFSIWLVNLLLTIITLGVYSAWATVRRRRYFYGNTELNGDRFDYHAEPIEILKGRLMVIGGVILFYILLAIAPTLGLLVALVLLALIPWIIIRSWRYNAIMTSYRGVRFNYHCQTGQAYWALLFCPLLLILGLYAVIIVMAMFLGSVASTPSTAITLIVVSAILLVPLLAVINGIVSTLQHSLYVNNLYFGNSSFISTLKKSAFIKIAFFSVLIFIPFFFVAMMFAGAFFADLFQSALNGSIANENKTAMLIIQNASNLLFMMLMLLLGTMVSSSYRIVAQRNYLFSQTTLQGDIKLRSSMKLLSYMGLLMTNSLITVCSLGLATPIAEVRHARYMANATEIEGDLSLLNIHAHQDTANSALAEEAVQALDLGTGF 398
2 -8.920[C] KOG4631 NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit  ali follow..  10  26...........................LAQHEKRLAQIGLKDPWIRNYVYLY---DRKYPHVVGQWAHFKKLILPGWKAGVAFTAALIFVEEAY................................................................................................................................................................................................................................................................................................................ 89
3 -6.560[S] KOG1443 Predicted integral membrane protein  ali follow..  8  1...............................MNRTVFLAFVFGWYFCSINRWMFDPKDGLGIGYPVLVTTFHQATLWLLSGIYIKLRHKPVKNVLRKNNGFNWSFFLLLPTAVASAGDIGLSNVSFQYVPLTIYTIIKSSSIAFVLALSVIIMFVGVALMVFKPSDSTSTKNDQALVIFGSFLVLASSCLSGLRWVYTQLMLRNNPIQLANNKMLENFGESKPHPIHTIHQLAMGITLLLTSLLVEKPFPGIFSSSIFRLDTSNGGVGTETTVLSIVRGIVLLILPGFAVFLLTICEFSILEQTPVL--TVSIVGIVKLSERLSG-------FYNWLGMLIIMDVCY-YNYFRYKQDLLQKYHSVSTQDNRNELKGFQDFEQLGSKKIAP........ 414
4 -6.100[S] COG5305 Predicted membrane protein  ali follow..  10  62.............FPNQGELVSLLAARSFPALLGAVSIPL-----------YILGRLAFRSSLV-----------GQLAAGMMAVSPYAVYLGQEVRHYTLAMIWVIASLSCLVIATRHIQNRTLLPFWLIILWVGINALGIATHYFFTLTLCAEALVLIFLAWQQSTQAKTLVFFSPLWWRIYAVAAGTAVAGLVWLPSILENRYRSSLTAWIQVQGIGLHLINPIFQAFAAWVTMIMLLAVVIASGLVMLIFAIWATPILVRGFKFQLQQPQTSLATQVFIGVVLGAIALFFILTYIFGV-------DITRGARYNFVYFPAVIILVGASLAKAVMIIWLMGFVSAVTVICNLGYQKYY-IIQQNSQVPVLIATTHKTLVQTGEMMGIARELK... 435
5 -5.730[R] COG4147 Predicted symporter  ali follow..  12  37.........................IMFLIFVVFTLGITYWASKRVRSRSDYY-----TAGGNITGFQNGLAIAGDYMSAASFLGILVFTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQGPIRI--------LSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMY--------------VLFGGML-------ATTWVQIIKAVLLLFGASFMAFMVMKHVGFSFNNLFSEAMAVHPKGVDIMKPGGLVKDPISALSLGLGLMFGTAGLPHILMRFF----TVSDAREARKSVFYATGFMGYF---YILTFIIGFGAIMLVGANPEYKDAAGHLIGGNNSAVAFATILAVVAGLTLAGASAVSHDL.. 387
6 -5.450[R] COG4146 Predicted symporter  ali follow..  9  7.........................LSFVGFTLLVAIITWWKVRKTDTQQGYF-----LAGRSLKAPVIAASLMLTNLSTEQLVGLSGQAYKWEVTSAVTLIFLALIFLPRYLKRGI---ATIPDFLEERYDKTTRMIIDFCFLIATGVCFLPIVLYSGALALNSLFHVGESLQISHGAAIWLLVILLGLAGILY--------------AVIGGLRAMAVADSINGIGLVIGGLMVPVFGLIAMGKGSFMQGIEQITTVHAEKLNSVGGPTDP---------LPIGAAFTGLILVNTFYWCTNQGIVQRTLASKSLAEGQKGALLTAVLKMLD---PLVLVLPGLAYPTLVNNVLPVPLVGFFGAV------LFGAVISTFNGFLNSASTLFSMGI.. 360
7 -5.130[S] KOG2568 Predicted membrane protein  ali follow..  9  115.............................DTEILITKTGIYNLLFISCDPQ-MTGKTVWKNPDGYLPGRMAPLVNFYVYMSLAYLLLSAVWDILPLQHCITAVILLGLLEMLFWYLDYANFNHTGMRPLALTTWVVTIGALRKTVSRILILCVSMGFGVVKSTLGGLT----------SKVLLVGVTYFIASEILDIAEHVGIIDDMSGRSK---------------------LFLVLPDAFLDAFLILWIFTSLSKTLEQLQMKRTSVKLEIYRKFSNALAVMVVASVAWIVYEVYFKATDPFNERWQTA----------------WTITAFWDVIAFLLLCIICYLWTPSQNSQRDANMKLMMDRYAYSGDVDEENEEAQSLTGG........... 438
8 -4.960[NU] COG2165 Type II secretory pathway, pseudopilin PulG  ali follow..  17  22.....................................................................................................................................................................................................................................................................................................................NPKLQEKPMLKPELQAKFL-GFTLIELLVVVIIIGVLAAIALPSLLGQVNKAKQSEARNYVGTANRSQQAFFLEYQRFATDLSELQVG. 120
9 -4.830[O] COG4846 Membrane protein involved in cytochrome C biogenesis  ali follow..  13  61...............................MLEAFIIGLLFSTVLIWTSRFEVKGTEI------YMKRSKAFPVILISLLIIRTVMKIFIS-GELGGMFFLLAFCMIVPWRAAMLYKYK...................................................................................................................................................................................................................................................................................... 147
10 -4.820[O] COG3175 Cytochrome oxidase assembly factor  ali follow..  10  25.........................................................................................................................................................................................................................................................................................MLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDGGALRNTQVDQARTVTVEFDSNSQGPF------RFRPVKNSMEGEINQIVYEVVNKEGRSVSAQAIPSYAPKQAT. 137
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.