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Query: [E] COG4401 Chorismate mutase, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIVRGVRGATTVKANQEKEILDATEGLMRTICEENEIDPENVAQVILTVTEDLTATFPAKALRRLAGWTHVPVMCAQEIPVPNGLEKCIRVMITLNTTKAQSEIHHVYLNEAVKLRPDLQLTKDSLast
1 -82.300[E] COG4401 Chorismate mutase  ali  100  1MIVRGVRGATTVKANQEKEILDATEGLMRTICEENEIDPENVAQVILTVTEDLTATFPAKALRRLAGWTHVPVMCAQEIPVPNGLEKCIRVMITLNTTKAQSEIHHVYLNEAVKLRPDLQLTKDS 125
2 -6.830[K] COG4957 Predicted transcriptional regulator  ali follow..  13  5............ADNNIDVLIELTADVVSAYVSNNPVPIGELPALIGQVHTALKG...................................................................... 47
3 -5.800[U] KOG0090 Signal recognition particle receptor, beta subunit (small G protein superfamily)  ali follow..  9  130..LPRAAAVVVVDALEFLPNIRAASEYLYDILTNASVIKNKTPVLLCCNKTDKVTAHTKEFIRKQ............................................................ 193
4 -5.720[K] COG1309 Transcriptional regulator  ali follow..  12  245.QLRSIR------------LTDTAWEQLAELAEKNNLTRSEMIEIFFSGKRT-NSQLPT.................................................................. 293
5 -5.620[R] COG0431 Predicted flavoprotein  ali follow..  7  30KKVLFIVGSLR-QGSFNHQMALEAEKALAGKAEVSYLDYSAL------FSQDLEVPTHPAVAAAREAVLVADAIWIFSPVYNFSIPGTVKNLL................................ 117
6 -5.560[T] KOG0194 Protein tyrosine kinase  ali follow..  10  197.........VAVKRLIGDAKRPQLVDFCNEANIMTLLEHKNIVALYGFASLQ-------------------PIMLVIEFVPGGDLRKYLQRTPNVPSKQIIKFAMEIHLSSKNVIHRDLAARN.. 297
7 -5.090[S] COG5506 Uncharacterized conserved protein  ali follow..  10  10...EKAHGGLKINPDEQRRYLGTFEERVLGYVDIDTANSPQLEKGFLFILENLQEKAEPLFV............................................................... 68
8 -5.020[I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III  ali follow..  6  46..............EASETVATMGFEAAQNCLAVSPMDVNEIDLIVVTTSATHAFPSTACQIQKMLGIKDAIAF-----DVAAACSGFVYALTVADQFIRTGKVKKALVIGADLFSRALNPEDRG 152
9 -5.010[R] COG4900 Predicted metallopeptidase  ali follow..  12  4..................IRLASVEADIKNAVVRHNLNHLFQVDIVVVYNPNSHSKAVARIFQEVLGLNPVYIMELLRPFKRLSCAERVKVIAH--------ELAHIPATKSGALRP........ 100
10 -4.890[T] KOG0197 Tyrosine kinases  ali follow..  14  261......KNNMKVAIKTLKEGTMSPEAFLGEANMMKALQHERLVRLYAVVTKE-------------------PIYIVTEYMARGCLLDFLKRLIDMSAQIAEG----AYIERMNSIHRDLRAAN.. 365
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.