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Query: [P] COG4454 Uncharacterized copper-binding protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTRLKLALLLTALATPAFAGGTHSGGDNVMAIGEPGDKSKVTQTIQVTMKETPDGKMMFTPAKFEFKKGKTVRFAVKNVGELDHEFILDEQKANLEHKAVMAKAPEMEHDNPNAISLAPGESGEIVWKFTNDGMFEFACLKPGHYEAGMRGDLKVSAKLast
1 -82.300[P] COG4454 Uncharacterized copper-binding protein  ali  100  1MTRLKLALLLTALATPAFAGGTHSGGDNVMAIGEPGDKSKVTQTIQVTMKETPDGKMMFTPAKFEFKKGKTVRFAVKNVGELDHEFILDEQKANLEHKAVMAKAPEMEHDNPNAISLAPGESGEIVWKFTNDGMFEFACLKPGHYEAGMRGDLKVSAK 158
2 -55.400[C] COG3241 Azurin  ali follow..  15  1MKAYLALISAAVIGLAACSQEPAAPAAEAAPADAAEAPAAGNCAATVESND----NMQFNTKDIQVKACKEFTITLKHTGTQPHNIVIGKTEDMDGIFKDGVGAPDDARVVAHTKLIGGGEESSLTLDPAADGEYKFACTFPGHG-ALMNGKVTLVD. 183
3 -38.800[C] COG3794 Plastocyanin  ali follow..  20  1MHRRAFLAGGTTLSVGVLAG----------CIGPSVSKSDYDIGMVSNGFVPQEPVEGEDMATHQLTAGDTVTWA--NTGSRNHTVTAYGSGLPEGASTEPDARRAWQDNVEGGGNISPGATYEVTLT--VPGEYYYFCIP--HEGAGMRGKLVVDD. 149
4 -28.300[C] COG4263 Nitrous oxide reductase  ali follow..  17  522........................AEKDGIDLMKDNKVIREGNKVRVYMV---SMAPSFGLTEFKVKQGDEVTVTITNLDEVTHGFVMVNHGVCME--------------------ISPQQTSSITFVADKPGVHWYYCSWALH--MEMCGRMLVEK. 635
5 -25.100[S] COG4633 Uncharacterized protein conserved in bacteria  ali follow..  18  204....................................SATKAVKTPEGTQEATITVEKGYKPERVIVEVGQPVRLDFQRHNL-FDKLLIPDFDL--------------------AVNLAPNQTTSVEFTPKYPGEYQFTCGMK-----MYRGVVEVKPA 302
6 -22.000[Q] COG2132 Putative multicopper oxidases  ali follow..  19  372...........................................................TAPLAELKLGKSYVIDMENLTPQSHPMHLHGMGFKVLSSSTRPVQPLISD----TYLIQPNEKVQLGFVADNPGDWLLHCHIIEHQKSGMTSYVRV... 463
7 -21.800[P] COG2822 Predicted periplasmic lipoprotein involved in iron transport  ali follow..  15  1MTINFRRNALQLSVAALFSSAF-------------MANAADVPQVKVTVTD-----KQCEPMTITVNAG-KTQFIIQNHSQKALEWEILKGVMVVEEREN----------------IAPGFSQKMTANL-QPGEYDMTCGLLTNPKGKLIVKGEATAD 122
8 -16.300[C] COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2  ali follow..  111...APVAIILMLGTVTWISTHRLDPYRPLERIDENRQVTADIKPITVEVVAMD--LFFYSVNEFAAPVDVPINFKITGTTAM-NSFFVPALAGQIY--------------------AMGGMQTKLHAVINKEGVYDGISAFSGPGFSHMRFKFHGLSQ 252
9 -16.000[Q] KOG1263 Multicopper oxidases  ali follow..  11  418...........................................................EPNVLNITHRTFIEVVFENHERSVQSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKCWAAILLTFDNCGMWNIRSENAERRYLGQQLYASVLSP 523
10 -14.800[C] KOG4767 Cytochrome c oxidase, subunit II, and related proteins  ali follow..  10  161.............................................................NRLVLPIDTRIRLILTSGDVI-HSWAVPSLGIKCD--------------------CIPSRLNQVSLSIDREGLFYGQCSLCGVLHSSMPIVVQGVSL 237
11 -11.400[U] KOG1631 Translocon-associated complex TRAP, alpha subunit  ali follow..  13  1MRHLMFLMLMVLPIVICTFSAPNKFGAYAAEAVEDDLVDVEGEEGAVTGEDAEADEDS-PGQQLDLPGGKPVEFLIGFTNKGAEEFVIETVEASFRYPMDFNYFIQNFSAVAYNREVKPGFESTVSYTFLAGRPFGLNIAL--YNEAVFNETVLISEV 191
12 -10.600[S] COG3126 Uncharacterized protein conserved in bacteria  ali follow..  15  6PKALWQIVGGAALAVSLTGCAHQSAEAPVAAPISTATVAASVAQSTVH------GTVNI-RERVALPPDAVVTVTLSDISLADAPSRVIAQKAVRTEGKQA---PFTYSLPFNPSDIQPNARVIVSAAITRNGQLLFI.................... 133
13 -10.600[R] COG5633 Predicted periplasmic lipoprotein  ali follow..  1MRKGCFGLVSLALLLLVGC-------------RSHPEIPVNDEQSLVMESSLLAAGISAEKPVLSTSDIQSASSTLYNERQEPVTVHYRFYWYDARGLEMHPLER-------RSVTIPAHSAVTLYGSANFLGAHKVRLYL................. 123
14 -10.200[S] COG5513 Predicted secreted protein  ali follow..  12  181...........................................................NGTTISLEKGETFYLRLEENPTTGYSWELNLSQGLS---LVSDDYYPPEAEESEQPLLGAGGVHLWEIKADSEGKQQATAIYKRSWENETG-NVEVA.. 280
15 -9.690[U] KOG3317 Translocon-associated complex TRAP, beta subunit  ali follow..  17  31MFKHLLTLFALCAVFSTCL-------------------SEDETRARLLVSKQILNK--------YLVEKSDLRYTIFNVGSGATKVRLVDSGFHPEAFDVVGGQPTAV-------RIAPQTNFTHVLVPKAFGYFNF..................... 140
16 -9.350[S] COG5569 Uncharacterized conserved protein  ali follow..  14  1MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATG---VVKGFDLESKKITIHHDPIAIKTGDKVAFNFVQQGN............................................................................. 99

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.