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Query: [S] COG4461 Uncharacterized protein conserved in bacteria, putative lipoprotein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRWIGVLVTALVLSACAANPPANTTSPTAGQSLDCTKPATIVQQLVCHDRQLTSLDHRLSTAYQQALAHRRSAALEAAQSSWTMLRDACAQDTDPRTCVQEAYQTRLVQLAIADPATATPPVLTYRCPTQDGPLTAQFYNQFDPKTAVLNWKGDQVIVFVELSGSGARYGRQGIEYWEHQGEVRLDFHGATFVCRTSLast
1 -78.400[S] COG4461 Uncharacterized protein conserved in bacteria, putative lipoprotein  ali  100  1MRWIGVLVTALVLSACAANPPANTTSPTAGQSLDCTKPATIVQQLVCHDRQLTSLDHRLSTAYQQALAHRRSAALEAAQSSWTMLRDACAQDTDPRTCVQEAYQTRLVQLAIADPATATPPVLTYRCPTQDGPLTAQFYNQFDPKTAVLNWKGDQVIVFVELSGSGARYGRQGIEYWEHQGEVRLDFHGATFVCRTS 197
2 -26.600[S] COG3755 Uncharacterized protein conserved in bacteria  ali follow..  25  1MLLRTMMIAAALLCLAPVAAQAQAESPDYDRCREKPENDNTPGILRCGDAEIKFQDARLNKAYKADMADAAKAALLKAQRAWIAFRDACATVQALSSCYLKHTARRAQALEE..................................................................................... 133
3 -8.510[R] COG3895 Predicted periplasmic protein  ali follow..  14  1MKNSYSALWGRPAKVVLVALILGGLGLAIPSY------AQETQTYYCSP------TETLTIKMVE-----------------------------------------------------------------------------GSAIQVTLPDGRTVVLPQAESASGNKYSNGFITVWSKGNTALVEEGGNVKDCV.. 108
4 -8.500[R] KOG3540 Beta amyloid precursor protein  ali follow..  13  11ATGRLLLLLLVGLTAPALALAGYIEALAANAAMFCGKEPDPTGTKSCFETKEEVLQ--CQEMYTNVMEANQRVSI----DNWCRDKKQCKSR--PFKCLVGEFVS............................................................................................ 140
5 -8.240[R] COG0727 Predicted Fe-S-cluster oxidoreductase  ali follow..  13  39...............................GFRCELCAR-----CCTKEFLLDSDEIIKQIDPYAVTPAPYYEFCDQNGR-LKTKPDC----ENKRC--RIYESR........................................................................................... 119
6 -8.190[TZR] KOG1704 FOG: LIM domain  ali follow..  12  199............................HFHHFQCAQCNDVLNKPVCSTFSCTTCRLSFS---------SDTPHMSQGDLHW-HASAEC------CVCLGVKYSRVGESL....................................................................................... 288
7 -7.980[P] COG3487 Uncharacterized iron-regulated protein  ali follow..  19  19RRGIMIRKTILSASFVLLAASAAFTALPAQAATDAAAVIKHYADVAHAKEDSLTTAKALDKAIDALIATPSEETLKAAREAWIKARVP............................................................................................................. 107
8 -7.930[S] COG5463 Predicted integral membrane protein  ali follow..  16  12MKRTKSITPVALAVATVFMLAGCEKSDETVSLYDCS-AANPGKSAECT------------TAYNNALKEAERTAPK------YATREDCVAEFGEGQCQQAP............................................................................................... 112
9 -7.850[S] KOG2117 Uncharacterized conserved protein  ali follow..  12  58...................................KKFEEQHKKALEEDPCAFAYDEVYDDTY-EKADRRQKEREIVYERKLAKERAKEQHLPDQVKVVTGSYKRKLEERDQ..................................................................................... 158
10 -7.430[O] KOG0320 Predicted E3 ubiquitin ligase  ali follow..  256........................DESQKEELYKCP---------ICMD-SVSKRETKCGHVF--------RECIET----AIRATHKC-------ICNKKLTARQFFRI....................................................................................... 317

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.