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Query: [M] COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVVVNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVDTRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLTKNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLFSRKGSEEKQNLast
1 -142.000[M] COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein  ali  100  1MSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVVVNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVDTRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLTKNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLFSRKGSEEKQN 472
2 -38.300[M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)  ali follow..  16  84.........................................................................................................................................................................................................................................................AGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGEPTTSELKNPERNISMGAAYLNILETGPLAGIEDPKLQYALVVSYANGAGALLRTFSSDRKKA---------ISKINDLDADEFLDHVAR-----PQAPRYIYKLEQALDAM................................................................... 241
3 -30.500[ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain  ali follow..  20  36....YAPFESKNSQGELVGFDIDLAKELCKRINTQCTFV-ENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQ----GQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVPSVKDEKLFGVGTGMGL-RKEDNELREALNKAFAEMRADGTYEKLAKKYFD........................................................................................................................................................................................................................................................... 254
4 -25.200[S] COG4764 Uncharacterized protein conserved in bacteria  ali follow..  16  47.........................................................................................................................................................................................................................................................TSREFGVPVPVLMATIYTESGFQPYARPPSSAYGYSQALDGTWDRYRRASRTNFADAIHFIGWYHYQSYLKNGVNRNDAFS---LYLAYHSGHGGY-------ARGAWRSNSTAIAGAKKTQAMANRYRVQLR.......................................................................................... 188
5 -11.500[R] COG3953 SLT domain proteins  ali follow..  14  5....................................................................................................................................................................................................................................................................LMTIAQHESGGNPKAIAKAGSQGLMQTIPSTFNAHGMNNILNPIHNAAAAIGYIKSRYGSINNVPGIRS------VGYANG-GLITKEQIARVGEGNKRE................................................................................................................ 115
6 -10.800[P] COG4521 ABC-type taurine transport system, periplasmic component  ali follow..  11  45...........................FAKESGATVDWRKFDSGASIVRALASGDVQIGNLGVAASQQVPIEVFLLASKLGNSEALVVKKT---ISKPEDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPPAIIAAWQRGDIDGAYV............................................................................................................................................................................................................................................................................................................................ 175
7 -9.130[PET] KOG1052 Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits  ali follow..  456.............NDRFEGYCIDLLRELSTILGFTYEIRLVEQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGLNPLSPD-MYILLAYLGVSCVLFVIARFSPYEWYNPHPCNPDSDVVEN------NFTLLNSFWFGVGALMQQGSELMPKALSTRIVGWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGATMT-----------------------------FKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSDYAFLMESTTIEFVTQRNCNLTGLIDSKGYGVGKITIAILQLQEEGKLHM-----KEKWWRGNGCPEEESKEA--SALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFCSAMVEELRMSLKCQRRLKHKPQAPVIVKTEEVINMHTFNDRRLPGKET 906
8 -9.050[PET] KOG4440 NMDA selective glutamate-gated ion channel receptor subunit GRIN1  ali follow..  12  456.................YGFCIDLLIKLARTMNFTYEVHLVADWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDN-----LHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSI-FMEDLDKTWVRYQECDSR-----APATLTFENMAGVFMLV------------VAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDRKSGRAEPDPKKKATFRAITSTLASSFKRRRSSKDTSTGGGRGALQNQKDTVLPRRAIEREEGQ.... 928
9 -9.040[PET] KOG1054 Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits  ali follow..  11  432.............NDRYEGYCVELAAEIAKHVGYSYRLEIVSAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGLDPLAYE-MCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSN---EFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLEAGSTKE-----------FFRRSKIAVFEKMWTYM----KSAEPSVFVRTTEEGMIRVRKSKGKYAYLLE-----------STMNEYIEQRKPCDTMKVGGN-LDSKGYGIATNPVNLAVLKLNEQGL-KNKWWYDKGECGSGGGDSKDKTSALSLVAG--GLAMLVALIEFCYKSRSESKRMKGFCLIPQQSINEAIRTSTLPRNSGAGASSGGSGENGRVVSHDFPKSMQSIPCMSHSSG. 898
10 -8.920[K] COG3888 Predicted transcriptional regulator  ali follow..  13  90.......................VAKNYSESKGIDLIVRFYDDAISLMNDLSQGLLEFALAPIFTE------IIYSISNRNSIILGAVASGGSGVYKNVNCNCGKILTSESSSMMILAREFAKTRK---ISEIAIFKDPRRAIKDYESFKAEYIVI............................................................................................................................................................................................................................................................................................................................ 213

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.