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Query: [S] COG4704 Uncharacterized protein conserved in bacteria, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKKWAVSLILLTTLGNLAWSWSARANFNGKLTVEIDGLKNKQGQVCVSIFTSSQGFPGDRKRVFDRQCTQINETPLKLTFNNLKAGTYAVAAIQDLNGDGTLNRNDLGMPVEPFGFSRNPEVRTSAPKFGDAAFILAGRNTTIQVQMKKLLast
1 -78.200[S] COG4704 Uncharacterized protein conserved in bacteria  ali  100  1MRKKWAVSLILLTTLGNLAWSWSARANFNGKLTVEIDGLKNKQGQVCVSIFTSSQGFPGDRKRVFDRQCTQINETPLKLTFNNLKAGTYAVAAIQDLNGDGTLNRNDLGMPVEPFGFSRNPEVRTSAPKFGDAAFILAGRNTTIQVQMKKL 151
2 -9.570[P] COG2822 Predicted periplasmic lipoprotein involved in iron transport  ali follow..  15  1MTINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDITVNAGKTQFIIQNHSQEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMT........................................................... 102
3 -8.790[H] COG2998 ABC-type tungstate transport system, permease component  ali follow..  12  1MEFTMKKTTFTLAAASLILVSYSASSADDARIRLATTTSTYDSGLLLLPKFEQDTGY-----------KVDVIATGTGKALKMGENGDVDLVMTHAPKAEASFVEA--GFGVLPRKLMYNDFVVVGPES...................... 118
4 -8.570[S] KOG3306 Predicted membrane protein  ali follow..  11  6IIRSSPTLAFIVLQICFIFFASTFPCSSGSEDSYTI------TGRVK-----IPPSNVIGHIAKFSNVKVILNGGQKYFTFHEVPAGTHLIEV.......................................................... 95
5 -7.670[S] COG3656 Predicted periplasmic protein  ali follow..  12  23VAAAALGASRVVPGALAEAATSSKAWASGMQLDIQFS-IEDESGKTVRTLTESLRRWTRDNGQLVSTVSATRNPGTYAVAWDGAPQGDYYVCVSGREHGPYGLVRQKVSVGTSAFKKSLGADGDIEAVNVS.................... 192
6 -7.240[M] COG3203 Outer membrane protein (porin)  ali follow..  10  2MKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLY--------GKVDARHSFSDNN------------KQDGDKSYVRFGFKQITDQLTGYGQWEGAQDGNATRLGFAGLKFAEFG................................... 111
7 -7.100[R] KOG4745 Metalloproteinase inhibitor TIMP and related proteins  ali follow..  8  1MPGSPRPAPSWVLLLRLLALLRPPGLGEACSIRAKISSEKVVPASADPADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGQKQYLLTGQVLSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCGCQIT............. 161
8 -7.060[R] KOG4680 Uncharacterized conserved protein, contains ML domain  ali follow..  12  1MSRIFAILPLAAVFLLLLVSPIVAIDEENAEYEVKVKEVD-SFGKLVIEVSYFGWHVHSETHDLCTETSCPIQTGDFLVAHSYTPPGSYLLKMMLDAKKK................................................... 133
9 -7.040[S] COG4885 Uncharacterized protein conserved in archaea  ali follow..  10  1MNEKVVVAAIVIIIASAIAVAVTASKFESGDIDMKLEAVNDSH-AIKAKIYDIQTDLLLNELEETFKSPESRFTAELTIPFEK--TRDYKIVL---QVGDRIYDSYRLTLRNLRNLVSEDMKLEASLVDSDFLLTSVKNGSVGFVARFY.. 166
10 -7.010[S] COG2968 Uncharacterized conserved protein  ali follow..  11  1MKLKTLALAAMIGLGTLPLALQAQAAEVPEGPHVVTSGATPDIATIAIEVSVSAKDAADAKKQVDTRVAQYFDFNKSGIEKKDVKAANIRTQPEYDYQKSGE----------KGYRAVRQVQVTLGLNEIRAVELGVASPET......... 157
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.