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Query: [S] COG4731 Uncharacterized protein conserved in bacteria, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRRRHVGVGAELTAFRILAAISCERLFWETGSRNQAVKTRAESANREISMIRTAMIAATALAASLAASAPAFAADVVGLWATPGNGGQVEISRCGNSLCGKLVTSDHIKTNPGLKDIKNKDESQRSRTLKNLQMLYDFSGGPTKWTGGKVYNPEDGGVYAGTIELVSTTELKLKGCVVAPLCKTQKWTRIRLast
1 -115.000[S] COG4731 Uncharacterized protein conserved in bacteria  ali  100  1MRRRHVGVGAELTAFRILAAISCERLFWETGSRNQAVKTRAESANREISMIRTAMIAATALAASLAASAPAFAADVVGLWATPGNGGQVEISRCGNSLCGKLVTSDHIKTNPGLKDIKNKDESQRSRTLKNLQMLYDFSGGPTKWTGGKVYNPEDGGVYAGTIELVSTTELKLKGCVVAPLCKTQKWTRIR 191
2 -6.630[S] COG2353 Uncharacterized conserved protein  ali follow..  12  1.................................................MLKKTLAALALGSALFTAGQAMA-----ADYKIDKEGQHAFIFRIKHLGYSWLYGRFNDFDGSFTFDEKNPSADKVKVTINTNSVDTNHAERDKHLRSGDFLNVSK--TFESTEVKANGDSADITGNL.............. 126
3 -6.590[R] KOG4745 Metalloproteinase inhibitor TIMP and related proteins  ali follow..  12  2.............................................PGSPRPAPSWVLLLRLLALLRPPGLGEACSCA------PAHPQQHICHSALVIRAKIS-------SEKVVPASADPADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEANSQKQYLLTGVFIHLCNYIEPWEDLS 141
4 -6.400[R] COG3683 ABC-type uncharacterized transport system, periplasmic component  ali follow..  19  1MTR--FGVRA-KTAAHFWVTRTGGPNFAPFLVTFGSSPKPRES-RPGMQLKRHAIILASALAATLAATRPAYVKALRHLWRFDDLFSSTVMMEFDKNSDLKLQLVTQNGKDVTMVPPPHLMANFDNDQLILFESEPKVPIKLTGTIDIGVYDP----TFYTAIDFTEDSNITVAG................ 215
5 -6.240[S] COG5588 Uncharacterized conserved protein  ali follow..  10  1MELR-VG-GAKPSDNSPAASKGFSDPLDSHGVP---------------GRSKQYLIHSAFTGTIGGVAMAYVDWAIKGPK--------IASCSCDYGCPCEFNGKPTEGLCEGLECMLIEEGWFGDLRLDGLKVAAVYRWPGGGGVVRGFFDANADQAQIDALFTILGGKE.................... 150
6 -6.210[N] COG1681 Archaeal flagellins  ali follow..  13  6.RKGAVGIGTLIIAMVLVAAVAAAVLINTSGYLQQKASGTGRETTQEVA-------IKVDRVVGYAPDITGDITRLAVYISPNAGSSGIDLNK.................................................................................................. 94
7 -5.970[S] COG3212 Predicted membrane protein  ali follow..  8  1MRKLMIPIVAGVVIAGGVTVGAQVFAKEDDSAQFKQVHQAESVSADNEGLTLAEASDIALERAGNGVVTEAEKDRDNGRVKNDDDEYDFKI----DQQTGEILKEKQEQRKGSKPREGHSSSKGSEAVISMDEAKEIALKEVSGKIDDIELERENGSLYEVEIESDHYDTVYVDAMTGNVL.......... 188
8 -5.820[K] KOG4319 DNA-binding nuclear protein p8  ali follow..  66  1MRRRNVGLLAELETF................................................................................................................................................................................ 33
9 -5.550[C] COG3038 Cytochrome B561  ali follow..  16  51....HKSTGISVLALAVL------RLLWRLYVGAPKPIAGPPVWQERVANATHIMLYVLIFTIPLAGWLYDSARG.................................................................................................................... 115
10 -5.430[S] COG5514 Uncharacterized conserved protein  ali follow..  14  1.................................................MKKFIIASLVGISAALPLPTHAETNKLVGTWKTVEPGGTDVAPGKEGSNVGKGGTAVEPYYEVLTFEPAADATNASDQYLVAMYYKHEVFRVRDNDQRGCLIYDKKNNTVYNTFCIPRAVCVVAEGPA.............. 150
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.