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Query: [S] COG4808 Uncharacterized protein conserved in bacteria, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEFYMKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVKLast
1 -83.000[S] COG4808 Uncharacterized protein conserved in bacteria  ali  100  1MEFYMKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK 157
2 -13.800[M] COG3056 Uncharacterized lipoprotein  ali follow..  12  28..RVSESPNMFKKILFPLVALFMLAGCAKPPTTIEVSPTITLPQVTVSINGADQRTDQALAKVTRDNQIVTLTASRDLRFLLQEVLEKQMTARGYMVGPNGP-----VNLQIIVSQLYAD..................................... 147
3 -13.000[N] COG5567 Predicted small periplasmic lipoprotein  ali follow..  34  1.......MKNVFKTLAVLLTLFSLTGCGLK............................................................................................................................... 23
4 -12.700[S] COG4939 Major membrane immunogen, membrane-anchored lipoprotein  ali follow..  14  1....MKLKKVAMGITVVMASSLLLVGCGSSDDSSTYKLEEKNFDGFMSIEVKDGKITKANYDYKNKDGKLKSEDADYEKAM-GQSASSVEVVSGATHSSDAFINYANQLIQ.............................................. 158
5 -12.100[S] COG3126 Uncharacterized protein conserved in bacteria  ali follow..  13  1..MKPWQPKALWQIVGGAALAVSLTGCAHQSAEAP-AASVAQSTVHGTVNIRERVALPPDAVVTVTLSDISLADAPSRVIAQKAVRTEGKQAP-FTYSLPFNPSDIQPNARVIVS.......................................... 121
6 -11.200[N] COG5461 Type IV pili component  ali follow..  11  21MRAGRSRTGLPVLPVLAVAMTALLVGCAQRDSITVGAIPDDYRTNH--------VIAEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDKSAAPTLTIQIPSGS--------------------------ANEVAATAAGRDFARLAVASGVKRNR 145
7 -11.000[MP] COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance  ali follow..  18  2.......VKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQSWRGV-----------------------------------ADCEGIETSLFLEKD..................................................... 66
8 -10.400[R] COG5633 Predicted periplasmic lipoprotein  ali follow..  13  1.......MRKGC-FGLVSLALLLLVGCRSHPEIPVNDEQS--------------VMESSLLAAGISAEKPVLSTSDIQPSASSTLYNERQEPVTVHYRFYWYDAR.................................................... 84
9 -10.200[S] COG4925 Uncharacterized conserved protein  ali follow..  9  1MKMEYNGIKWMLICLGVFLLAILATGCIEQNNIDQ--------------------------------AISNQSEMNSSEKTVSTEPEHGLALSEMSVKITSQGHIATFQLYDTVAAKELYEQLPLELDLTNFRDAQWMFYPPKKLNATAQE...... 122
10 -9.560[P] COG0226 ABC-type phosphate transport system, periplasmic component  ali follow..  14  1MLSYIKRIKRIPVSITVLTLAMSLAACGGQQGSD--NTATQDGSSGTAKDATASSPAKLDLGGNVSLTGAGASFPAPLYASWFTDLNKKYPNLQINYQSVGSGAGVEQFITVDFGASD....................................... 120
11 -9.130[P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen  ali follow..  21  4.EFIMKFSLKSLLTIAAAASTLILAGCGEKAVD----------------------------NNKVKIGVMAGAEAQVAEVAAKVAKEK----YNLDVELVTFTDYVTPNAALDDGSIDANAFQHKPYLDKQIADRGYKLA................. 110
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.