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Query: [S] COG4818 Predicted membrane protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSYNTSLGLSENIVAALCYPVGWLSGLFFLLLERKNKFVRFHAMQSVLLFMPIALFIFLVAWIPTIGWFIADGAGMTAMLLILIPMYMAFRGSKFKIPIIGNIAYNFAYGELast
1 -87.000[S] COG4818 Predicted membrane protein  ali  100  1MSYNTSLGLSENIVAALCYPVGWLSGLFFLLLERKNKFVRFHAMQSVLLFMPIALFIFLVAWIPTIGWFIADGAGMTAMLLILIPMYMAFRGSKFKIPIIGNIAYNFAYGE 111
2 -17.700[S] COG3296 Uncharacterized protein conserved in bacteria  ali follow..  12  12...SRNWAMIAHLSTFAGYLIPFGN-VVWLMKKDESEFVNDQAKEALNFQISILIYVIVSAVLILIGIPLLIGVLIFDLVVTIMAAIKANEGIRYRYPLKITFIK...... 119
3 -7.250[V] COG4452 Inner membrane protein involved in colicin E2 resistance  ali follow..  18  280VAVTTPADQYQLTDRATKYLLIALTFMAFFVFETLTA-QRLHPMQYLLVGLSLVMFYLLLLALSEHTGFTVAWIIASLIGAIMNGIY........................ 367
4 -7.100[P] COG1320 Multisubunit Na+/H+ antiporter, MnhG subunit  ali follow..  9  2..........IETAKVVVAVFILLGALICLVLRLPDVFTRAHAASKGSTLGVNMILLGVFFYLWFVTGELSAKILLGILFIFITSPIGGHLICR................. 90
5 -6.340[U] KOG2887 Membrane protein involved in ER to Golgi transport  ali follow..  4  103............ASGVFFIFIAFTM-FLPVMVLMPQKFAICFTLGCGFIIGSFFALRGPQNQLAHMSSAERLPLTLGFIATMVGTIYVSMVLHSYILSVIFSALQ...... 194
6 -6.320[S] COG5521 Predicted integral membrane protein  ali follow..  8  185...............FVSSLMLAIFTTLFIWMTKRSSFSRIASFKESFNLTL-VIAACIIGFIYFDITIIMAVQSLGMVLMIAWTFLKTRFYKTSEKSMAA.......... 275
7 -5.820[U] COG5102 Membrane protein involved in ER to Golgi transport  ali follow..  16  76............LGSLACYAIACF--MFPVLVLKPRKFVLLWTMGSLLAVLGFAIVQGFVAHFRQLTTMERLPITLSYFVTLLATIIATIKIKSTILSIVFGVLH...... 166
8 -5.560[MO] KOG1771 GPI-alpha-mannosyltransferase III (GPI10/PIG-B) involved in glycosylphosphatidylinositol anchor biosynthesis  ali follow..  10  251...............RILYGRFVFPIISFFQFNVTSGLSSLYGLNAWHYYLSQALPLICGGFLPFVLLTMDLQTAGTILCVFFPYSLIGHKELRFVYPISPILL....... 339
9 -5.490[S] COG2246 Predicted membrane protein  ali follow..  15  18....VKIGVSETIAAYAAYGALMPVSFIG---RLGVEWLRFCVVQTTNITIIFVVTNLSRSG................................................. 82
10 -5.440[S] KOG4753 Predicted membrane protein  ali follow..  14  93........VRENWRTVLAAFTLLVVGTGLFVMGTFAIADPQNTSQGVVFFVAGLIC----------------FIPGAYHVVYIWLAAKGYRGFDFHLPLFT.......... 170
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.