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Query: [S] COG4855 Uncharacterized protein conserved in archaea, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .
# Score Template Links and tools%idFirst MERSCIASPTHPFFGDCMKCYVCAEQGKDTDAVAICIVCGMGLCTEHAIREETEIWSGGYPFPAEKVKGTLPRILCPYCYNVMKEDLast
1 -42.700[S] COG4855 Uncharacterized protein conserved in archaea  ali  100  1MERSCIASPTHPFFGDCMKCYVCAEQGKDTDAVAICIVCGMGLCTEHAIREETEIWSGGYPFPAEKVKGTLPRILCPYCYNVMKED 86
2 -11.800[O] KOG0944 Ubiquitin-specific protease UBP14  ali follow..  20  11VDAGAFIRPTFDQKIFKDQCAYCFKDPHGKDGLYISLKNYHAFCREHAE..................................... 59
3 -11.100[O] COG5207 Isopeptidase T  ali follow..  14  210...............NLNQCSSCDLTQN----LWLCLHCGNIGCHSHALDHYRSNNNHPLAIKLGSLSSSTYDLYCYACDDETRFP 285
4 -9.870[J] KOG2613 NMD protein affecting ribosome stability and mRNA decay  ali follow..  19  1MEFTPIDPHQHQNAAT-LLCCNCGTPIDGSTGLVMCYDC---------IKLTVDITQG--------IPREANISFCRNCERFLQPP 68
5 -9.710[S] KOG2811 Uncharacterized conserved protein  ali follow..  12  3.QDNNGPAVKRAKPSERLQCYFMEKKKR------RCGM-QNLYCSEHLNLMKKAANSQVHNKNGSEAEKERERVPCPKCNKTKLSH 102
6 -9.300[K] KOG2845 Activating signal cointegrator 1  ali follow..  18  152LYTRERQDRLAVALPGRHPC-DC--LGQKHKLINNCLICGRIVCEQ------------EGSGP------------CLFCGT..... 205
7 -9.230[Q] COG4647 Acetone carboxylase, gamma subunit  ali follow..  15  66..........................QDAQKKWVIKCSCGHAFCKLHANIYVRDTAEKMELLASDTHWQVYREYICPDCGILLDVE 136
8 -8.710[L] COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain  ali follow..  14  4..............TMIQSCNECKGKGYRVKSYKICSACGTGFRS--TEDIKDHFKGVSNSARQRFDLEDSHEVPCEVCRGK.... 70
9 -8.570[O] KOG0978 E3 ubiquitin ligase involved in syntaxin degradation  ali follow..  17  829.AAIVRLQEEVKNCKNILKCGVCFDRPKEV----VIVKCYHLFCQQCIQRS------------------EIRHRKCPGCGTAFGQN 892
10 -8.550[R] COG1161 Predicted GTPases  ali follow..  15  3...................................CIGCGAKI-LKKKIAERDQMEAVQAGDEGSEASIKTEDLYCQRCFRLRHYN 67
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;