current user: public

If you have questions about the server, please let us know.

Query: [J] COG4901 Ribosomal protein S25, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst MGGKKKPTLSQLAKKAEKEKAQQAQKAKKEVKKEETPAKRTIQVLDEKVFQAIAKEVQNMRVITPYEIASKYGIKMSVAFKVLRNLKERGDLVLVAKGHRTEIYVPAKRSLast
1 -54.000[J] COG4901 Ribosomal protein S25  ali  100  1MGGKKKPTLSQLAKKAEKEKAQQAQKAKKEVKKEETPAKRTIQVLDEKVFQAIAKEVQNMRVITPYEIASKYGIKMSVAFKVLRNLKERGDLVLVAKGHRTEIYVPAKRS 110
2 -47.500[J] KOG1767 40S ribosomal protein S25  ali follow..  22  1MAPKKDK--VPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108
3 -12.600[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  14  22...................................................SVINVLLREQPIGIIKLSQETGIPEHKIRYSLRILEQENIISPSREG............ 68
4 -12.500[K] COG2345 Predicted transcriptional regulator  ali follow..  16  13............................................GDGDTRRKILLILLERAPVIASDIAEQLQLSTVGVRRHLDNLVEENLAE................. 61
5 -12.300[S] COG4344 Uncharacterized protein conserved in archaea  ali follow..  16  11...........................................LINDYDMLRVLKHFTIAHVDYAKNITRYTEIPQMRVREYLKRLKDLGLLDYYTNT............ 65
6 -11.900[KH] COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon  ali follow..  19  24..............................................................VTMRELSRELDVSPQTVLRWLEELKEQGYIHKRESRKGTLV....... 64
7 -11.500[K] COG3355 Predicted transcriptional regulator  ali follow..  16  31...................................................EVLHILLQNGKMTTDDLSQKLNVTKASISKALNNLLDKGLIQR................ 73
8 -10.900[K] COG1522 Transcriptional regulators  ali follow..  23  7..............................................DKIDRKILEVLQSNGRLTNLEVAERVNLSPSPCLRRIRRLEESGVIR................. 53
9 -10.800[KG] COG1349 Transcriptional regulators of sugar metabolism  ali follow..  18  1...........................................MKPRQRQAAILEHLQKQGKCSVEELAQYFDTTGTTIRKDLVILENAGTVIRTYGG............ 55
10 -10.200[K] COG1654 Biotin operon repressor  ali follow..  11  9...................................................TLISLLADGEFHSGEQLGERLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSL....... 60
11 -9.460[S] COG3373 Uncharacterized protein conserved in archaea  ali follow..  12  34..............................................................SYLSEISRAVKSDPSNVKGCLESLIGLGLVIVEQSKNGFKYFKINPEI 91
12 -9.200[S] COG4519 Uncharacterized protein conserved in bacteria  ali follow..  14  12...................................................YLALLVESLERPNVPKLIEKTGWPRRTIQDVIKAMPGIGIE.................. 52
13 -9.190[K] COG1777 Predicted transcriptional regulators  ali follow..  12  11...........................................AIENSTRREIIRMLTQFERSYALELSRSIGLSQQAILKQLEMLERANLVT................. 60
14 -9.100[S] COG3398 Uncharacterized protein conserved in archaea  ali follow..  15  99....................................RITERADVFENSNRARIYEYIKTRPGAYLSEIIEKAGIDRGAARYHIKILKAHHKIEAYRESGKTRYFQNNST. 171
15 -9.040[S] COG2512 Uncharacterized membrane-associated protein/domain  ali follow..  14  205..GRSTGLGVRSESSGGAVSLTEPIIEPAGNPDIETAALNRIPLSPEL--CEVLDIIRGHK-ITQKDLRSKLDYSEVKVSLMLSELEKRGLIRKLRNGRENILVLVDEE. 310
16 -9.030[K] COG1497 Predicted transcriptional regulator  ali follow..  16  7............................................KGELTRFQILSEIAMRQ-VRQKDIADKLGVTVQAVSENIKSLIAEGLVESGSGRSHYKI....... 66

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.