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Query: [M] COG4932 Predicted outer membrane protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKYMVKWRSFFIAAIIGLLVFQNFSPVLATIIDEKTKMITLKIIKEDKDTKEKINGSSFEIKNKKTGETKEVSITEDGTIVENSLSEGEYIVKEKKAAPGFTLDEQTYNVTLADKDEVITSISTKDEAEKTPIVTEQPSKKGNLKAVIADNIFTAVKVENGTGNELSTTNRIKNGGAVVLKMNFTFSGKNYKAGDTFKTVLPETFNFGTTNLTGDFLPSTEAKWDLNASTRELTITFLKDGVQEGNYDIELSTALKSFSETDKTRQEAVFNTAGGNTIYQLEIIPEVDKATQVMLEATPGKLNPDKATVDARFNLTKESNELGELRLSDTAYGGSTIINRNSIKVYSTDISAKGTFIGSKQLLNEGTDYELIYAPSGLTIKLKEGLKAKGYQVTYERSIDKTNTSLTTLGTSATTVGSSGMLSNGSMTISVTIKAYDHLTKKAVYNPVTQCIDWTINVNYDLANLTPDTVLKDVLTDDNVSYVADSLKIKQVTFNEESGEVVIGEDASNDWTVSTISDNGSFNMNYKKTDKKAYQVTYSTKLTDFSPRKIKNEVTDEKGVKATENFDFKPDLLKKEAGEIDYYNNTMDWTITVNSEGINMQNINIVDEFSTGVKSLISYSVYAYPSDSGYNILTEGRDFTIQKDVTPDGFKIKLIGNYATTDNKIVVKMKTKIDLTDGANTLNNKASFSYFDGSLTQYSETIKAEATPETSILANGGKVGKWNPATGEINWIVSVNAMGKKYNKLVLDDEFLDGTTFVEGSLQYRNVVNSSELTDLSIPLEIKGTLAQVGDANYPTKIDTSANKIHLEFGNLDTNRVFVKYKTKPKDNWFFSQWVNNKAIVSDNGADEQIYETKEFAFLQNEVIKVAGNIDSTFGNKVNWNMELLNITPERTLSNPVITNRLEQGNTGAQFIKNSFQVINTKTNEPINEENYDITFEGNTFTIQFKNYTAMAPIKVNYSTISLLSGPISNETTVEAEDFSNVPMFFKKRNVAVSPVFTVGTGSGIATIGTIKITKVDEDDTTKKLEGAKFQLYTLDGEKSGQEITTNSEGEILLDGIQSGKYKLVETKAPEGYNISDEYKEGKEITVSSSGEELLLTIKNAMKKGNVILTKKDSASHEVLADAEFELQNATGSKLKEKLTTDASGNIEITDLAPGDYKLIETKAPTGYQLDATPVNFTIDFNQSEAAKVSKTNTAKTGTVMLTKKDSATNAELADATFELRNEDETLVRENLVTDDNGEISVADLAPGDYKLIETKAPTGYQLDATPVNFTIDFNQSEVEKVSKTNTAKTGTVVLTKKDSATNAELADATFELRNESDTLVRENLVTDDNGEISVADLAPGDYKLIETKAPAGYQLDATPVNFTIDFNQSEAAKVSKINTAKTGTVVLTKKDSATNAELADATFELRNESDTLVRENLVTDDNGEISVADLAPGDYKLIETKAPTGYQLDATPVNFTIDFNQSEAAKVTKTNKKKIGTIIVNFIDVDGNQLNDKEVHTGNVGEEYSVKAKEIVGHTLVKDPANKKGMYKETSQEITFVYEKKAMPITVEPTEPSKPTEQLTESATVAEPKPIKQNIKTTNKSPNNKRKLPSTGDEFPYTMLFTGLFVSVAGVFFLRKPKQIKLast
1 -311.000[M] COG4932 Predicted outer membrane protein  ali  100  1MKYMVKWRSFFIAAIIGLLVFQNFSPVLATIIDEKTKMITLKIIKEDKDTKEKINGSSFEIKNKKTGETKEVSITEDGTIVENSLSEGEYIVKEKKAAPGFTLDEQTYNVTLADKDEVITSISTKDEAEKTPIVTEQPSKKGNLKAVIADNIFTAVKVENGTGNELSTTNRIKNGGAVVLKMNFTFSGKNYKAGDTFKTVLPETFNFGTTNLTGDFLPSTEAKWDLNASTRELTITFLKDGVQEGNYDIELSTALKSFSETDKTRQEAVFNTAGGNTIYQLEIIPEVDKATQVMLEATPGKLNPDKATVDARFNLTKESNELGELRLSDTAYGGSTIINRNSIKVYSTDISAKGTFIGSKQLLNEGTDYELIYAPSGLTIKLKEGLKAKGYQVTYERSIDKTNTSLTTLGTSATTVGSSGMLSNGSMTISVTIKAYDHLTKKAVYNPVTQCIDWTINVNYDLANLTPDTVLKDVLTDDNVSYVADSLKIKQVTFNEESGEVVIGEDASNDWTVSTISDNGSFNMNYKKTDKKAYQVTYSTKLTDFSPRKIKNEVTDEKGVKATENFDFKPDLLKKEAGEIDYYNNTMDWTITVNSEGINMQNINIVDEFSTGVKSLISYSVYAYPSDSGYNILTEGRDFTIQKDVTPDGFKIKLIGNYATTDNKIVVKMKTKIDLTDGANTLNNKASFSYFDGSLTQYSETIKAEATPETSILANGGKVGKWNPATGEINWIVSVNAMGKKYNKLVLDDEFLDGTTFVEGSLQYRNVVNSSELTDLSIPLEIKGTLAQVGDANYPTKIDTSANKIHLEFGNLDTNRVFVKYKTKPKDNWFFSQWVNNKAIVSDNGADEQIYETKEFAFLQNEVIKVAGNIDSTFGNKVNWNMELLNITPERTLSNPVITNRLEQGNTGAQFIKNSFQVINTKTNEPINEENYDITFEGNTFTIQFKNYTAMAPIKVNYSTISLLSGPISNETTVEAEDFSNVPMFFKKRNVAVSPVFTVGTGSGIATIGTIKITKVDEDDTTKKLEGAKFQLYTLDGEKSGQEITTNSEGEILLDGIQSGKYKLVETKAPEGYNISDEYKEGKEITVSSSGEELLLTIKNAMKKGNVILTKKDSASHEVLADAEFELQNATGSKLKEKLTTDASGNIEITDLAPGDYKLIETKAPTGYQLDATPVNFTIDFNQSEAAKVSKTNTAKTGTVMLTKKDSATNAELADATFELRNEDETLVRENLVTDDNGEISVADLAPGDYKLIETKAPTGYQLDATPVNFTIDFNQSEVEKVSKTNTAKTGTVVLTKKDSATNAELADATFELRNESDTLVRENLVTDDNGEISVADLAPGDYKLIETKAPAGYQLDATPVNFTIDFNQSEAAKVSKINTAKTGTVVLTKKDSATNAELADATFELRNESDTLVRENLVTDDNGEISVADLAPGDYKLIETKAPTGYQLDATPVNFTIDFNQSEAAKVTKTNKKKIGTIIVNFIDVDGNQLNDKEVHTGNVGEEYSVKAKEIVGHTLVKDPANKKGMYKETSQEITFVYEKKAMPITVEPTEPSKPTEQLTESATVAEPKPIKQNIKTTNKSPNNKRKLPSTGDEFPYTMLFTGLFVSVAGVFFLRKPKQIK 1622
2 -13.700[S] COG1470 Predicted membrane protein  ali follow..  10  173.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VKKKEERELVVFYPYSEVTTEVNRSIMLPLTIFNNGTET-------NVTFSVVNAPKDWDVESITLQLKVLPSSAGSHVVKFSINGDIYSFYVNVVQPKMEASKVTFSVLLSAGEDSVISMDVREPRDWKACILYLRRGETKVVNLILEIPRNASLGYYESKISFTVRKSNGEVIKNETITLGVNIYKTYKGQKATLK---LILVDDTGSPVPESYATDSTGTLEVE-MNPGKYVITIEKE------GYETKKEEVELGDGEKKELKLLLVREPYYFNVEAQSDIYPIVMEGLSRPF----------TIVIENLGKSD-------EYKLEIRGIPENWNANIEVTKVKVKSGETKTVYLKVYLNAMPGTYNATTVISSSGIKKEIPVKIKNLLNYRLTITAGEEKTAMMDIFNFGNAPLTTVKGPQGWDVKVDPSQIPSLSPKGRERVTITVKVPEGTPAGDYRVQITVKADQAEWQDTLRVVVRQRSTSTYI-GVLILIISLFMMRRRR... 728
3 -13.000[R] COG2373 Large extracellular alpha-helical protein  ali follow..  7  256LGDILQQAGYLAVGRYDYSNPATLFTLSDIGVSAHRYHNRLDIFTQSLENGAAQQGIEVSLLNEKGQTLTQATSDAQGHVQLENDKNAALLLARKDGQTTLLLDLAEFNIAGAPGYSKQFFMFGPRDLYRPGETVILNGLLRDADGKALPNQPIKLDVIKPDGQVLRSVVSQPENGLYH-----------------FTWPLDSNAATGMWHIRANTGDNQYRMWDFHVED--------------ERMALNLTGEKTPLTPKDEVKFSVVGYYLYGA---------------------------ANGNTLQGQLFLRPLREAVSALP---EFGDIAAENLSRTLDEVQLTLDDKGRG--------------------EVSTESQWKETHSPLQVIFQGSLLESGGRPVTRRAEQAIWPADA---RPQFASKSVYDYRTDSTVKQPIVDEGSNAAFDVYSDAQGVKKAVSGLQVRLIRERQFDQKDLIENEQTLDLKADETGKVSFPVEWGAYRLEVKAPNEAVSSVRGSGAVRPDRVTLKLDKASYRPGD-TIKLHIAAPTAGKGYAMVESSEGPLWWQEIDVRAQGLDLTIPVDKT--NRHDLYLSTLVVRPGLPLGDENRRLDLALETPAKMRPNQPLTVKIKASTKNGEKPKQVNVLVSAVDSGVLNITDYVTPDPWQAFFGQKRYGADIYDIYGQVIEGQGRLAALRFGGDGDELKRGGKPPVNHVNQAVTLNEQGEGSVTLPIGDFN--------GELRVMAQAWTADDFGSNESKVIVAAPVIAELNMPRFMASGDTSRLTLDITNLTDKPQKLNVALTASGLLELVSDSPAAVELAPGVRTTRALPGYGDGEIQATISGLALPGETVADQHKQWKIGVRPA---FPAQTVNYGTALQPGETWAIPADGLQNFSPVTLEGQLLLSGKPPLNIARYIK--LEQTASGLFPSLYTNAAQLQALGIKGDSDEKRRASVDIGISRLLQMQRDNGGFALWDKNGDEETAYVMDFLVRAGEQGYSVPTDAIN---LQDPGMMSIPYADNLKASKFAVQSYAALVLARQQKAPLGALR---------EIWEHRADAASGLPLLQLGVALKTMGDATRGEEAIALALKTPRNSDERIWLGDYGSSLRDNALMQQAFGERWLSTQESN-RTIQDLPGKWQAQTSFSAEQLTGEKAQNSNLNSDQLVTLQVSNSGDQPLWLRMDASGNNVLQIERHILGTDGKSKSLDSLRSGDLVLVWLQVKASNSVPDALVVDLLPAGLELENQNLANGSASLEQSGGEVQNLLNQMQQASIKHIEFRDDRFVAAVAVDEYQPVTLVYRAVTPGTYQVPQPMVESMYV........................................................................................................................................................................................................................................................................... 1636
4 -10.400[S] COG4485 Predicted membrane protein  ali follow..  6  457................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DGIAKEWGFASRSAYSRDIPAMESFSTYIGNQFTRTEKLQTQTGNDSMKFNYNGISQFSSVRNRS--SSSTLDKLGFKSSGTNLNLRYANNSILADS------------------------LFGIQYNISDSPIDKYGFKDIYQKDNLTLYEN---------QYSLPIAVASQSVYNDVKFNEHTLDNQASFLNQLANVNFDYFSPIPYEKTEKIENTNDLISVTSSSNEDAAIQYQIEVPENSQVYLSFINLHFSNDKQKKVDILVNGEKKTTKEKKTFNINVSFPGNSQVSFESPTFYRLDTKTFTEAIQKIKEQPVTVSTSKNKVFATYDVQQ---DTSIFFTIPYDKGWSAYQDGKKIEIKQAQTG---------------------------------KVDIPKGKGTITLSFTGAICSFTSLLLFRKSSK.. 849
5 -9.700[M] COG1361 S-layer domain  ali follow..  11  45......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MILLKDVVYDIN-KWKGVFIVFNEDMEPIGPNLTLIYVPDPQKVRTLLQNQTFLRAMAETLGYNPDNPIEYAEFLRWLSTA-SQMEIWNAIVKTIDEHPELGIRLEDISKPYYVPNARPVGVNETIKIEYRGKTVYITVLSAYPNGV-KVSISGPIQWRASMVQGLLLSKIDVKGTIKPGQYFTVEVHLK---NIGSRKVRFVTAVLSPTPVVPSSTKFKTEEESLATTVPQVLTQTGTIQESSVKFIDLIEPGEYKVNENAKPGDYPLY-IYFAYTTGENLEQRTLYDTAVVTVARDYEANFIIVQNVPRIVHPGEDFTIFKNMGEDPAKDVRGTSPSNFYRKFVDPGMEFNETFKLHVSESAKTGTYTFKIRLKYYSGNSNQEKTQDFTISTTVIRRREA----------FIEIDNVTLTPEKIEPGTTFNITLRLRNVGEGYAKGLEVRIVPTKALVRREIKKVDLSQLSNLPIPGGKELAKNLQTALNQVIGQIAQEEVSFLPIGEDNVKYNGVIMPNQTIEIHFERLENNIYPIIKYLSSPDDKLISDERIIGIDVTGSEKLVISSISTSPSRILISFKIENVGDGKADYIIIMPNPQFP-----KLSETSDQIINVGSLGKGDVDVDENAKSGRYLIPQIEVNIPVIIAEKPKLVITDVRFGKDVNIYITVKNVGGEQAESVVIEGVVRSSQP----TLVKRTDYIGTLNPNQTGEGVITLSIEKDAVPKVYNILIRMRAVGDKEKGDDNVYVFEGTIKVPVKENTESKEKLRNLAI-------------AGILAIVITLLTYFKRRH.. 899
6 -9.520[S] COG4885 Uncharacterized protein conserved in archaea  ali follow..  13  2.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NEKVVVAAIVII-----IAVAVTASKFESYARFGDID----------KLEAVNDSHAVVTFVTEVRKENVEEF---------AIKAKIYDIQTDLLLNELEETFKSPESR-------FTAELTIPFEK--TRDYKIVLYLQVGDRIYDSYRLTLRNLRN-------------------LVSEDMKLEASLVDSDFLLTSVKNGSVGFVARFYVES----VKDYDVVARIKVLQADSNVLVGESWKNVTLQKGKTNIVSAEFE-------------------------------------------------PDDYNYVVKLDVWRNGKLVKSWADVLNLAPTKKLSKGEVEKEVDFEAEKFVTAVEPEYVPKSGGV----P--G-------VVFALMALAGVALWRKARR... 301
7 -9.460[S] KOG3306 Predicted membrane protein  ali follow..  15  31..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CSSGSEDSYTITGRVKIPPSNVGHIAKFSNVKVILNGGQ-----KITFLRPDGYFTFHEVPAGTHLI-EVSAM-GYFF--SPVRVDVSARHRGKVQATLTETRRS............................................................................................................................................................................................................................................... 127
8 -9.310[P] COG5266 ABC-type Co2+ transport system, periplasmic component  ali follow..  14  54........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DRLHIFSKPMQLVTEKGKENMIQRGTYNYQYRSNRPVKDGSYLVIAEYQPTFWSKNKAGWKQAGIKEMPDASYCEQTRMFGKNIVNVGHESADTAIITKGQNLEIVPLDNP----------------ANIHVGE-----------------RFKVRV-----------------------------RGEPLPNATVTATFDGTEAQAFSDSTDDKGEVDIIPLRQGFWKANKTDFPDQSVCQKQANYSTLT................................................................................................................................................................... 260
9 -8.950[R] COG3889 Predicted solute binding protein  ali follow..  12  504...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTFKVERGPFTIPKNAIVYNSTLK-KWVPQHAGEYTCKFGKWHDGTPMTMEDIKAAIAFSYEWSYKDGDNDPYYDEAMGASTRTLEQ-VFVNPTTYIVYSNITHPVADDQIAGN--NAWWATVPWYLRHAMEELVANP---QKYGVTNNYTFTQAEGPRLDLLVKDHVEDLKKVIEKLIEEKDVPWYLQGEITPDEAVKAYKSLLNKHGHAYDSN---GPFYLDKYDPDKGNVPKGAEVPARVMAGKPLTVKVMLTLKADRGYVTVSIVDANGNEVYSGEAKLTTAGTFELNVPGD-----ETKGWSTGKYTAIIRGGLSKEVTSFTIKKTFVVIKPTTTSPQQTTTSTPQQTSSPTATGTSPTETTTKGGICGPAI---------LVGLAVL----LLLRRRDN.. 931
10 -8.910[W] KOG4802 Adhesion-type protein  ali follow..  10  138.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EKASGFAAACVESCEVDSGVKKCCSNGC-------GHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQSEDDATHWQTVAQTTDERVQLTDIRPSRYQFRAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANNSDGSVTVTIVDLPEEPDIPVHH--YKVFLVPTKKKRRKTTDGFQNSVILEKLQPDDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEYHVRHNRTTGSEASSGMTHENYIILQDLSFSCYKVVQPIRPKSHSKAEAVFFTTPPCSANLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTEISQSQILPSDHYVLTVPNLRPSTYRLVQVLTPGG---EGPATIKTFRTPELPPSSAHRSHLKHRHPHHYK............................................................................................................................................ 674
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;