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Query: [U] COG5120 Membrane protein involved in Golgi transport, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MWLSDLQKIGVGTTALGFLFMIMGIFMFFDGPLLSLGNLLLVFGFFMIAGFSKSVSFFLRKDRMLGSISFFSGLLLTLFHFPIIGFFVECLGFFNLFKVFYPLIISFLRTVPYIGPYIDRLTSYQQSPVLast
1 -72.400[U] COG5120 Membrane protein involved in Golgi transport  ali  100  1MWLSDLQKIGVGTTALGFLFMIMGIFMFFDGPLLSLGNLLLVFGFFMIAGFSKSVSFFLRKDRMLGSISFFSGLLLTLFHFPIIGFFVECLGFFNLFKVFYPLIISFLRTVPYIGPYIDRLTSYQQSPV 129
2 -71.700[P] KOG1743 Ferric reductase-like proteins  ali follow..  42  1MWLTEAQKFGVAFTFGGFLFFLFGIFTFFDRALLALGNILFLIGVFLIIGSQKTYIFFTRPNKRRGSLFFLVGAFLILLKWTFLGFIIESLGIIGLFGDFFGVIVQFLRSMPIIGPILSHPAIAPIVD. 128
3 -19.300[U] KOG2887 Membrane protein involved in ER to Golgi transport  ali follow..  14  89..MPSGKAL-GLLLASGVFFIFIAFTMFLPAICFTLGCGFIIGSFFALRGPQNQLAHMSSAERLPLTLGFIATMVGTIY--SVIFSALQVIALAYYCISYFPGGSSGMKFL.................. 216
4 -17.100[U] COG5102 Membrane protein involved in ER to Golgi transport  ali follow..  22  62..LSRWERY-GICLLGSLACYAIACFMF--VLLWTMGSLLAVLGFAIVQGFVAHFRQLTTMERLPITLSYFVTLLATII-LSIVFGVLHILSFVAYLIAFFPFGTRTVSLG.................. 188
5 -7.750[S] COG3247 Uncharacterized conserved protein  ali follow..  18  24............FVALGVALLILGGIAFGNLFLATVVSVYYVGLMMLIAGIIEIIHAFGVKT-LSGLLYTAAGIVTFINPVLAAGVLTFLLAAALIGSGAFRIWLGF...................... 125
6 -7.610[J] COG3277 RNA-binding protein involved in rRNA processing  ali follow..  18  2..............................SRLRTLGRVKHMSKTGMLV------------VTLNPAYIPKIGDKVVTRRMEHIGFVADVIG..................................... 51
7 -7.610[S] KOG3918 Predicted membrane protein  ali follow..  20  4..................................SLWKGLVGIGLFALA--HAAFSAAQHRSYMRLTEKEDESLPIDIVLQTLLAFAVTCYGIVHIAGEFKDM.......................... 70
8 -7.560[S] COG3242 Uncharacterized protein conserved in bacteria  ali follow..  10  1...........................MNSTIWLALALVLVLEGLGPMLYPGAWKKMVSALAQLPENVLRRFGGGLVVAGVVVYYMLRKTIG..................................... 65
9 -7.440[G] COG4993 Glucose dehydrogenase  ali follow..  13  1MAENNARSPRLLVTLTALFAALCGLYLLIGGVLVAIGGSWYY----PIAGLVMLVVAGLLWRSKRAALWLYAALLLATMIWGVWEVGFDFWALTPRSD--ILVFFGIWLILPFV............... 109
10 -7.280[R] KOG3882 Tetraspanin family integral membrane protein  ali follow..  14  41........................SVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKL-TWPLLIVGFLTFIIGFGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRN. 148
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.