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Query: [A] COG5136 U1 snRNP-specific protein C, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTRYYCEYCHSYLTHDTLSVRKSHLVGKNHLRITADYYRNKARDIINKHNHKRRHIGKRGRKERENSSQNETLKVTCLSNKEKRHIMHVKKMNQKELAQTSIDTLKLLYDGSPGYSKVFVDANRFDIGDLVKASKLPQRANEKSAHHSFKQTSRSRDETCESNPFPRLNNPKKLEPPKILSQWSNTIPKTSIFYSVDILQTTIKESKKRMHSDGIRKPSSANGYKRRRYGNLast
1 -93.000[A] COG5136 U1 snRNP-specific protein C  ali  100  1MTRYYCEYCHSYLTHDTLSVRKSHLVGKNHLRITADYYRNKARDIINKHNHKRRHIGKRGRKERENSSQNETLKVTCLSNKEKRHIMHVKKMNQKELAQTSIDTLKLLYDGSPGYSKVFVDANRFDIGDLVKASKLPQRANEKSAHHSFKQTSRSRDETCESNPFPRLNNPKKLEPPKILSQWSNTIPKTSIFYSVDILQTTIKESKKRMHSDGIRKPSSANGYKRRRYGN 231
2 -38.800[A] KOG3454 U1 snRNP-specific protein C  ali follow..  21  1MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQTGGYQQVGAVFNQHMLARPRPPMMLPPGSMPMGMRPPVLPRPMMPPQG........................................................................................................................... 108
3 -31.300[A] KOG0150 Spliceosomal protein FBP21  ali follow..  18  1MERKFCDFCKCWLSDNKAS-VAFHESGKRHKMNVAKRITDISRNSEKSERERQKMDAEIRKMEEAAMKS.................................................................................................................................................................. 75
4 -14.600[A] KOG3408 U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing  ali follow..  19  53LGQHYCIECARYFD--SSQALLVHKKGKVHKRRLKNLREEPYTQEEAE....................................................................................................................................................................................... 98
5 -14.600[R] COG5112 U1-like Zn-finger-containing protein  ali follow..  19  53LGQHYCIECARYFD--SSQALLVHKKGKVHKRRLKNLREEPYTQEEAE....................................................................................................................................................................................... 98
6 -14.600[A] KOG2837 Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing  ali follow..  19  25..KFFCQMCQKQCRDAN----KCHLTSEAHQRQLLSYLRQFSNDFEKNFMQLLRTSYGTKRVRA....................................................................................................................................................................... 91
7 -13.700[A] COG5246 Splicing factor 3a, subunit 2  ali follow..  11  63SGKLVCKLCNTMHMSWS----ERHLGGKKHGLNVLRRGISIEKSSLGREGQTTHDFRQQQKIIE....................................................................................................................................................................... 124
8 -13.500[R] KOG4727 U1-like Zn-finger protein  ali follow..  20  84...FYCDVCDCVV-KDSIN---DHINGKNHQRNVRERFKLMKDKKEREKKEA................................................................................................................................................................................... 144
9 -13.500[R] KOG2785 C2H2-type Zn-finger protein  ali follow..  14  1MATYTCITCRVAFR--DADMQRAHYKTDWHRYNLRRKVASMAPVTAEGFQERVRAQRAVAEEESKG..................................................................................................................................................................... 64
10 -11.900[A] COG5200 U1 snRNP component, mediates U1 snRNP association with cap-binding complex  ali follow..  25  201.....CEVCGAYLSRLDTDRRADHFLGKIHLGKMREDYDRLMKNNRTTNASKTATTLPGRR.......................................................................................................................................................................... 259
11 -11.800[LD] COG5067 Protein kinase essential for the initiation of DNA replication  ali follow..  22  427....YCENCCERYKD------ERHLGGKHHRRKDENFLDDLFLLIRRPIRTN................................................................................................................................................................................... 474
12 -10.700[A] KOG2636 Splicing factor 3a, subunit 3  ali follow..  18  405..NYNCEICGNY-TYRGPKAFQRHFAEWRHAHGMRAHFANVTQEDAVSLWAKLKLQKASER.......................................................................................................................................................................... 470
13 -10.600[A] COG5188 Splicing factor 3a, subunit 3  ali follow..  9  420..EYRCEICSNK-VYNGRRTFERHFNEERHIYHLRSVFKGITKKEAQELWKNMQGQSQLTSIAA....................................................................................................................................................................... 488
14 -10.500[A] KOG0227 Splicing factor 3a, subunit 2  ali follow..  12  49LGSYECKLCLT--LHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPTKPQPLKRNVSVRRTVKPELQQRSLLFQIEYPEIEDNIKPRHRFMSSYEQKVQPYDKSYQYLLFAAEPYEIIAFKVPSTEVDKSVYFKPTKPEPNKPQSAVGANGLPPPPPPPPHQAQPPPPPPSGLFPPPPPPMANNGFRPMPPAGGFGH.................................. 272
15 -10.400[R] KOG2295 C2H2 Zn-finger protein  ali follow..  21  811..KWLCPLSGKKF-KGPEFIRK-HIF-NKHEEKVDEYFNNYLRD........................................................................................................................................................................................... 855
16 -10.400[O] KOG0717 Molecular chaperone (DnaJ superfamily)  ali follow..  15  316...PYCVVCSKSFK--TVNAKLNHENSKQHIRQLNELKKHMKEEDSTIFTEAEPKP............................................................................................................................................................................... 366
17 -10.200[O] KOG0802 E3 ubiquitin ligase  ali follow..  8  342LHAALCAIC-----EPMAKAKRNHL----HLGCLRSWLDQ-GLNEVYSCPTCRKPLFVGRTENEVNPRTVEVSSDEQLARQLERQNNPVHALATGLFPAEVPDSVENDTSRNLGLDPSWLQTWSSQGSDVAGPSTTSRTVGLGRVQMMMRHLASVGESYAQTALDDAAWSLWPMNPSQASTSSTTVPPGNGGRTGGLHLRTVSNTTNESLTNILAMAETVREVMPH..... 576
18 -10.100[R] COG4469 Competence protein  ali follow..  16  26.PPFRCPACKSPVRLRQGTIRRPH-ESEEHLTLKAKLYTSLVRTEAVCIEKYLPELQQIA........................................................................................................................................................................... 98
19 -9.840[K] KOG2857 Predicted MYND Zn-finger protein/hormone receptor interactor  ali follow..  16  17.SKYKCPYC-------SLGCFKIH----KVCNLINNAETPCAKPSDPSSTEEKPVV............................................................................................................................................................................... 65
20 -9.650[O] COG5243 HRD ubiquitin ligase complex, ER membrane component  ali follow..  6  349.....CIICDELIHSPNQQPKRGHI----HLSCLKNWMERSQTRLPVFDEKGNVVQTTFTSNSDITTQTTVTDSTGIATDQQGFANEVDLLPTRTTSPDIRIVPTQNIDTLAMRTRSTSTPSPTWYTFPLHKTGDNSVGSSRSAYEFLITNSDEKENGIPVKLTIENHEVNSLHGDGGEQIAKKIVIPDKFIQH..................................... 550
21 -9.230[K] KOG2482 Predicted C2H2-type Zn-finger protein  ali follow..  23  209LDNLQCLYCEKTFR--DKNTLKDHMRKKQHRK....................................................................................................................................................................................................... 238
22 -9.160[R] KOG2505 Ankyrin repeat protein  ali follow..  18  49KNISSCVNCQI--NLHTLDERKSHIKSDWHRFNTKR-FESIIEDLPESLSGSESETNSES........................................................................................................................................................................... 118
23 -9.100[TZR] KOG1704 FOG: LIM domain  ali follow..  9  234SSTFSCTTCRLSFSSDTPHMSQGHASGVKYRVGESLFCGYQTCGGEDEELLDEDRLGSPHRKVTQKSTKVVRIPASPRVAPRHPHVIQQNLTTTMTIQKPSVVIQNQRPKPPQRAPPPPPSENIYETVLPCSSNNSPNFDKKYSHELPTSPNHHNYYSKTPNNLLTGYPEMDGYSTSSSSDSDDEQLYISNIMAAASLSRVPAKSSSRKSKKNEPMMMSGGGVRKKKKSSR 485
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;