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Query: [P] COG5266 ABC-type Co2+ transport system, periplasmic component, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKTLTLLAVSALFATSAHAHRVWVETAHTHGGEYLKADLGYGEFPELEPIAKDRLHIFSKPMQLVTEKGKENMIQRGTYNYQYRSNRPVKDGSYLVIAEYQPTFWSKNKAGWKQAGIKEMPDASYCEQTRMFGKNIVNVGHESADTAIITKPVGQNLEIVPLDNPANIHVGERFKVRVLFRGEPLPNATVTATFDGFDTSDRSKTHKTEAQAFSDSTDDKGEVDIIPLRQGFWKANVEHKTDFPDQSVCQKQANYSTLTFQIGHSHHLast
1 -102.000[P] COG5266 ABC-type Co2+ transport system, periplasmic component  ali  100  1MKKTLTLLAVSALFATSAHAHRVWVETAHTHGGEYLKADLGYGEFPELEPIAKDRLHIFSKPMQLVTEKGKENMIQRGTYNYQYRSNRPVKDGSYLVIAEYQPTFWSKNKAGWKQAGIKEMPDASYCEQTRMFGKNIVNVGHESADTAIITKPVGQNLEIVPLDNPANIHVGERFKVRVLFRGEPLPNATVTATFDGFDTSDRSKTHKTEAQAFSDSTDDKGEVDIIPLRQGFWKANVEHKTDFPDQSVCQKQANYSTLTFQIGHSHH 268
2 -10.200[Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit  ali follow..  15  47..............................................................................................................................................................DLGTGPLYNDKAHGERITIRVI-MGAPLRDALVEILYNSPNESRGKADPHFRGWGRCPSNMETGEFIFETIKPGRVPFRDGRLMAPHVTLWIVARGINLGLQTRM..... 161
3 -9.340[M] COG4932 Predicted outer membrane protein  ali follow..  14 1209.....................................................TNAELADATFELRNEDETLVRENLVTDDNGEISVADLAPGDYKLIETKAPTGYQLDATPVNFTIDFNQSEVEKVSKTNTAKTGTVVLTKKDSATNAELA--DATFELRNESDTADLAPGDPVNFTI--TNAELADATFELRNES-----------DTLVRENLVTDDNGEISVADLAPGDYKLI---ETKAPTGYQLDATPVNFTID........ 1459
4 -9.160[R] COG2351 Transthyretin-like protein  ali follow..  15  2............................................................................................................................................................................GRLTTHVLAAGTPGKDLAITLFKIVNNLRQPIK---------TVRTNHDGRCEAPLLQAGIYELDGDYYRAAGVSLPDPAFLDVVTLRFGVADAGH 101
5 -8.200[S] COG5513 Predicted secreted protein  ali follow..  10  10LKAVKLVAILFMIFAVALSG----VDNGQNNTDNQTIGSANESQNTGNEEYIYGVANVENIDILTLESFPVQIHVIAEGH-TEIDEIKTETDGNTFNINITTKRPKEAICTQAIESFTETIPLEVQGLSAGNYTVNVLAVDNTLDETPEAMPPEQQVITEAGNGTTISLEKGETFYLRL--EENPTTGYSWELNLSQGLSLVSDDYYPPEAEESE-LLGAGGVWEIKADSEGKQQATAIYKRSWENETGTEDK---FILNVEVA.... 280
6 -7.780[S] KOG3306 Predicted membrane protein  ali follow..  10  26...............................................................................................................................................................ASTFPCSSGSEDSYTITGRVK-HIAKFSNVKVIL----------------NGGQKITFLRPDGYFTFHEVPAGTHLIEVSAMG------------FFSPVRVDVSARH. 113
7 -7.650[S] COG4549 Uncharacterized protein conserved in bacteria  ali follow..  25  1MMNLLAAGATLTLGTNTAFAH-ITLETQEAAVGSTYKAVLRVPHGCDGKATTAVRVQI.................................................................................................................................................................................................................. 59
8 -7.550[P] COG4454 Uncharacterized copper-binding protein  ali follow..  12  56..............................................................................................................................................................KMMFTPAKFEFKKGKTVRFAVKNVGELDHEFILANLEHKAVMAKAPEMEHDNPNAISLAPGESGEIVWKFTNDGMF-------------------------EFACLKPGH 144
9 -7.500[M] COG5386 Cell surface protein  ali follow..  11  1MKKLWKKGLVAFLALTLIFQ-----DSRLKDGGEQVQVNFYKDNTGKTTKESSEADKYIDHTATIKVENGQPYMYLTITNSNYWQTMAVSKDGTRPAKPAQAEVYQDSYQDVQTVSTDAANNTRVEKFKLSSLDDIIYSYMHIKVDAISYDHWYQVDLT-IDPSTFKVISEPAVTTPVTLADGI---TIPFVAKKANDDSNSSMQNYFDNPAWLKVK---NGKKTVAMTVNDN--TQISGALQDVKVVSEDKDANTRIVEFEVED... 269
10 -7.150[O] COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1  ali follow..  11  1MKQHRLAAAIALVGLVLSGCDS------------------------------QTNVELKTPAQKASYGIGLNMGKSLSQEGMDDLDSKAVAKGIEDALGKKKQQLTDEELTEAFAFLQKRAEERMAAIGDENAKAGKKFLEENGKRDGVTTTASGLQYEIVKKADGPQPKATD--VVTVHYEGRLTDGTVFDSSIE-----------RGSPIDLPVSGVIPGWVELQLMHVGKIKLYIPSELAYGAQSPSPAIPANSVLVFDME.... 223
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.