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Query: [U] COG5314 Conjugal transfer/entry exclusion protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMRRRFLSGLITLSLIAKPMADYVQPAYALIVFDPSNYAQNVLTAARSLEQINNQIQSLQNQATVLQNMARNLQGLDFSSVGQLTGSLQRIDGLMDQASGLSFDLNKLQDQWRNQYPESYDATIKVSDVASAARDRWQSAMQAFRQTMGVQSQIVENVRGDGDLLADLVNRSQGAAGALQASQATNQLLALSTKQQMQIQTLLATQFRAEAEDAARKAQSEEAARETTKRFLGTGRAYPGNLast
1 -78.500[U] COG5314 Conjugal transfer/entry exclusion protein  ali  100  1MMRRRFLSGLITLSLIAKPMADYVQPAYALIVFDPSNYAQNVLTAARSLEQINNQIQSLQNQATVLQNMARNLQGLDFSSVGQLTGSLQRIDGLMDQASGLSFDLNKLQDQWRNQYPESYDATIKVSDVASAARDRWQSAMQAFRQTMGVQSQIVENVRGDGDLLADLVNRSQGAAGALQASQATNQLLALSTKQQMQIQTLLATQFRAEAEDAARKAQSEEAARETTKRFLGTGRAYPGN 241
2 -10.500[S] COG3883 Uncharacterized protein conserved in bacteria  ali follow..  11  1.MKKNTFIAISLAAVISLTPAFTTNVF--------ADVNTDIQNQDKKINDIKSKKTGLQSDLSSLVADLEKAQEKAKSLQGEFDQTGKELKQLNQDIKDINERIKERETVLKERARAMQKTSNSNAYL----------DAENLSDLVGRVSAVNQLVDSDKSILEDQQKDEKALKTKQTAVKKKQEEQATAIHEFEAQQNKIEAQKAEKEAIVAQLAADQAS.................. 208
3 -9.500[U] KOG0946 ER-Golgi vesicle-tethering protein p115  ali follow..  10  788...................................AELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSVEVQGETETIIATKTTDVEGRLSALLQETKELKNEIKAL-----------SEERTAIKEQLDSSNSTIAILQTEKDKLELEITDSKKEQDDLLVLLADQDQKILSLK----------NKLKDLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI.......... 962
4 -9.490[R] COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain  ali follow..  2IVILYIAALIAAIALLVIAI-----------------LGKTLKSTSQTMDEVAKSLEKITVEVQGITGQSQKLLDKTNTLLEDVNGKVAKVDPVFDAVGDIGTSLLGLSQSVRELATLATNKVEQNEAKISQAVSISN....................................................................................................... 123
5 -8.510[U] KOG0412 Golgi transport complex COD1 protein  ali follow..  11  9..........................................ALDIGTNEQVDETLQRIADEEAKVNEKLESLLA------CQIEAKMSGIGRSLSLLHTVDSDSNKLNDQIVN----------------------TAQLAESVSAKVRRLDLARCRASECQQRVHDLIDLHLCSQGVVKAIGEEDEKSATHIARFLAMDQQLLRRTADDVQGSITSVSDAVKTLEDATEKTRV....... 175
6 -8.510[D] COG4942 Membrane-bound metallopeptidase  ali follow..  10  15.PRRFAIRPIIYASVLSAGVLLCAFSAHADERDQLKSIQADIAAKERAVRQKQQQRASLLAQLKKQEEAISEATRKLRETQNTLNQLNKQIDEMNASIAKLEQQKAAQERSLAAQLDAAFRQGEH---LSGEESQRGQRLQAYFGYLNQARQETIAQLKQTREEVAMQRAELEEKQSEQQTLLYEQRAQQAKLTQALNERKKTLAGLESSIQQGQQQLSELRANESRLRNSIAR....... 250
7 -8.180[S] COG5293 Uncharacterized protein conserved in bacteria  ali follow..  11  255....................................RVAEQYHELEERVNFLTSQIHEATNKNITDQKLLEFYQS---SLKSEDEPRPDDIVSIYENAGIE----GLVVRRLEEVEI---------RRLIENRREFLGSEIKRLRRDLVSRENFIREKSNERAELLEVLKT----HGALEEYTMLQEIYLDNVANLNEINKRIEELKQFEEERSSLKIEKELLLQRARRDY.......... 433
8 -8.160[U] KOG2180 Late Golgi protein sorting complex, subunit Vps53  ali follow..  45................................FNTVDYINQLFPNEQSLAGIDETIQKMQCEVSLIDDNIRSVVR---GQTNTGQDGQLALCEAQKVISSLFSHIIDVKTRAER----------------------TEEMVKEITRDIKQLDCAKRNLTAAITTLNHLHMLVGGIESLNKLIERRS--YGEILNPLQAITEVNQHFQQFSDIEEIKNLSQS.................... 206
9 -8.150[YU] KOG4460 Nuclear pore complex, Nup88/rNup84 component  ali follow..  11  553.......................................DIAPPPEECLQLLSRATQVFREQILKQDLAKEEIQRRVKLLCDQKKKQLEDLSYCREERKSLREMAERLADKYEEAKEKQEDIMNRMKKLLHSFHSELPVLSDSERDMKKELQLIPDQLRHLGNAIKQVTMKKDYQQQKMEKVLSLPK-IILSAYQRKCIQSILKEEGEHIREMVKQINDIRNH.................. 738
10 -8.140[U] KOG3838 Mannose lectin ERGIC-53, involved in glycoprotein traffic  ali follow..  11  317.......................................RELRQIWQGQSQIADHLRELSRKVDEIIGRQETTLSLVSRNAGQALPPPSDVDLLLTNQNMLLSSIREIRQLVGDINVRTDNIQTNQKHAPTAQIQSTGYDVQTLIAEMRGMNQVKQGITHVGQRLAAPQGAAQVANCPTGNCVGVTLFLSVTVVQLLLVFIYNV----------------KNRSEAQAKKFY......... 512

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24