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Query: [K] COG5340 Predicted transcriptional regulator, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSTQETQTIRQGLSTRESRLLSHLAAEGHQIISIDDVEATLEVAPNTAREIASRLTEKGWLDRLLPGRYLIIPLAAGEEAVYTTHEYLIASHVAEPMYIGYYSALSHHGLTEQVPRTVYVVTPTRAQSREIHGVPYRVATVTERKFFGYEPTSIEGTVVNVADLAKTLVDCADHPEYCGGIRELATAMVAADDQACSWATVGEYLQRLDNGAATKRIVYLADQLSIDLPTRETLVESFTSGYSLLDPTQSEQGSYDSEYRLRINVDPGTLGPTESLast
1 -112.000[K] COG5340 Predicted transcriptional regulator  ali  100  1MSSTQETQTIRQGLSTRESRLLSHLAAEGHQIISIDDVEATLEVAPNTAREIASRLTEKGWLDRLLPGRYLIIPLAAGEEAVYTTHEYLIASHVAEPMYIGYYSALSHHGLTEQVPRTVYVVTPTRAQSREIHGVPYRVATVTERKFFGYEPTSIEGTVVNVADLAKTLVDCADHPEYCGGIRELATAMVAADDQACSWATVGEYLQRLDNGAATKRIVYLADQLSIDLPTRETLVESFTSGYSLLDPTQSEQGSYDSEYRLRINVDPGTLGPTES 276
2 -10.900[K] COG3355 Predicted transcriptional regulator  ali follow..  28  24............GLSKSDVEVLHILLQNG---MTTDDLSQKLNVTKASISKALNNLLDKGLIQR.................................................................................................................................................................................................................... 73
3 -10.900[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  15  1MKEYSIFREIINDMDKRHISVINVLLREQP--IGIIKLSQETGIPEHKIRYSLRILEQENIISPSREGAIL............................................................................................................................................................................................................. 71
4 -10.700[S] COG2512 Uncharacterized membrane-associated protein/domain  ali follow..  20  234.PDIETAALNRIPLSPELCEVLDIIRGHKGRI-TQKDLRSKLDYSEVKVSLMLSELEKRGLIRKLRNGRENILVLVDEEH.................................................................................................................................................................................................... 311
5 -10.300[K] COG5625 Predicted transcription regulator containing HTH domain  ali follow..  21  18............GLKKNEIRIYRLLVEKRRGM-RIREIQRELGISERSVRTHVLNLYRRGLLKRELVQIYTPVSPL........................................................................................................................................................................................................ 86
6 -10.000[KH] COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon  ali follow..  21  1.............MKMKTLFLLIKLAKMGA--VTMRELSRELDVSPQTVLRWLEELKEQGYIHKRESR................................................................................................................................................................................................................ 59
7 -9.880[K] COG2345 Predicted transcriptional regulator  ali follow..  14  1MGDVVKGNDAHTGDGDTRRKILLILLERA---VIASDIAEQLQLSTVGVRRHLDNLVEENLAEA.................................................................................................................................................................................................................... 62
8 -9.610[K] COG4190 Predicted transcriptional regulator  ali follow..  20  61.......DDLMDTLTPRVLELIEAIRQEE----SINETARVVDRDVKNVHEELSRLAHLGIIFFEEDG................................................................................................................................................................................................................ 119
9 -9.290[K] COG1414 Transcriptional regulator  ali follow..  13  1MREPTLETDDRYRAPAKGLDILELLASVDGGL-TQAEIAKHLDRSPNEFYRMLDRLVKRGYVTKLDGDRYSL-----------TLKLFGLAQLHAPVRRLASFATPFMRELADRSKQANQLAVFDRGSVVVIA-------QQEAPDYWGISIRVGSHISLFDTGSGHVLL----------AFRSPEEREMMIAAHVKSRDEVNLDQDFYDRLDQIRERGYEMM..................................................... 196
10 -8.820[J] COG4901 Ribosomal protein S25  ali follow..  14  47..............EKVFQAIAKEVQNMR--VITPYEIASKYGIKMSVAFKVLRNLKERGDLVLVAKGIYV............................................................................................................................................................................................................. 105
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.