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Query: [S] COG5470 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKGYWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYNSPEYQAAAKIRQEVADAEMMIVEGILast
1 -66.500[S] COG5470 Uncharacterized conserved protein  ali  100  1MAKGYWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYNSPEYQAAAKIRQEVADAEMMIVEGI 95
2 -12.400[S] COG3224 Uncharacterized protein conserved in bacteria  ali follow..  13  15.FEYHFAHRVTPDHHEIFLECQEQLKILVTKYPG-YISSESTELRSEGDIFVAETVIRFDTLENFMGWIDSPERRQLIYLEENYQFEGKVNTEGY 109
3 -7.480[S] COG2350 Uncharacterized protein conserved in bacteria  ali follow..  20  35....YVIYAQDKADSLEKRAHLARLQLLHDE--GRLLTAGPSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVA................... 114
4 -7.290[L] COG1637 Predicted nuclease of the RecB family  ali follow..  10  115..............QELLAEHITTLGDGYTLIRREYPTAIGPVDILCRNSDGETVAVEIKRRGGIDGVEQLTRYLELLNRDELLKPVHGVFA... 192
5 -6.190[R] COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides  ali follow..  12  1MIYEIAMLPVQKDKISEFRQAFGDVVPLLKRARG---YRGHVLAQGVETPEVFNLIVRWRSLNDHTPGFASEDHEQFME................ 77
6 -6.060[K] COG2732 Barstar, RNAse (barnase) inhibitor  ali follow..  7  1.MNVYTFDFNDIKNQSDFYREFTQTFGLASEKVSDL---DTLWDAVMSDILPLPLEIEFVHLPDKLRRRYGALILLFDEAEEELEGRLRFNVR.. 89
7 -5.890[R] KOG3005 GIY-YIG type nuclease  ali follow..  13  172FYGVYCLISRSDRPCYKNRCYIGYTVDPIMQHNGGRDKGGAKKTDSRGPWDMVCVVHGFPNHVAALAWQNPLVSKSLKEKQLRKERKETPFAFQL 273
8 -5.800[S] COG2899 Uncharacterized protein conserved in bacteria  ali follow..  13  114......AVILAASRPEEYSRIMLEAHLPIAAFGGTFLM---------------MVGLTY-DHEKDVHWIAWLESRMARFATIKGVEIAFVLA... 185
9 -5.180[J] KOG2314 Translation initiation factor 3, subunit b (eIF-3b)  ali follow..  12  55FGNIIVVDHLPVVPKEKFEKLEGVVKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQEAQNAKEK........................ 125
10 -5.130[S] COG4274 Uncharacterized conserved protein  ali follow..  12  48.MTTYIVTEQGAKSVRDSPKRLDAARKQLGDMGGSFK----AFYLTMGEY-DMVAVVEAPDDAVLAR............................ 112
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.