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Query: [S] COG5505 Predicted integral membrane protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHSLISSDDVWVLWGFIAVWAAVSIGLEQRFKWASAVSGAIIALAGAMVFTNVGVLPVESPVYDTVWSYVVPLAIPLLLFQINVRQIFKESRRLLFIFLISSVGTVLGSILAFFLLKQHIPYLDKIGGMISASYIGGGVNFAAMAAKFETPGEYVSATVVADNFMMALLFFILISIPALKWFQRHYAMPFEEKVKADGNSGNSAESYWKRKDISLKDIAFNAGAAFALVAVSMKVSGYFKSIFSHPLLTGTLGDQYLVLTSLTVLIIFLFPRFFERLNGSQELGTFLIYLFFVVIGIPADLRLIVTNAPLILLFVFIIAISNLAVSLAAGKLFRVRLEEILLAVNATVGGPTTAAAMAIAKGWRELVAPIMLVGTLGYLIGNYVGTFMGNWFSSFLLast
1 -111.000[S] COG5505 Predicted integral membrane protein  ali  100  1MHSLISSDDVWVLWGFIAVWAAVSIGLEQRFKWASAVSGAIIALAGAMVFTNVGVLPVESPVYDTVWSYVVPLAIPLLLFQINVRQIFKESRRLLFIFLISSVGTVLGSILAFFLLKQHIPYLDKIGGMISASYIGGGVNFAAMAAKFETPGEYVSATVVADNFMMALLFFILISIPALKWFQRHYAMPFEEKVKADGNSGNSAESYWKRKDISLKDIAFNAGAAFALVAVSMKVSGYFKSIFSHPLLTGTLGDQYLVLTSLTVLIIFLFPRFFERLNGSQELGTFLIYLFFVVIGIPADLRLIVTNAPLILLFVFIIAISNLAVSLAAGKLFRVRLEEILLAVNATVGGPTTAAAMAIAKGWRELVAPIMLVGTLGYLIGNYVGTFMGNWFSSFL 396
2 -12.500[C] COG3493 Na+/citrate symporter  ali follow..  13  48......PTDLVGGFALMFVMGAIFGEIGKRLPIFNKYGAPVMIFLVAAYFVYAGIFTQKE---SNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGIVIGLCFGIPVDRI--VLPIMGGGNGAGAVPLSEIHSVTGRSREEYYSTAIAILTIANIFAIIFAALLDMIGKKYTWLSGEGELVRKASFKTEDDEK---AGQITHRETAVGMVLSTTCFLLAYVVAKKI---LPSIGGVSIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSFSKQLLWVLMVGVGCYTDLQEIIDATFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESSITAMANRGGSGDLEVLSAC-NRMNLISYAQISSRLG---GGIVLVIASIVFSMMV 446
3 -11.700[P] KOG3826 Na+/H+ antiporter  ali follow..  10  64......TVRSIFVIFILLVAGIFAAKISKALR----LPPLFGCLALGIIIKNITVFDQFFVFPPFVETMIRKVALVMIIVATDIHFLYENALMPVIGLVTAIGEIIAVTIASYFILN--------VMSIFCALILVTVSPAVTVPAMINFKEENILAICCVDNLFCVILFMVLSSII-------------------------------FTDAPIATTILLNAGSIVFGCIGGIVLGWILWRFPRSDAPHTQFARITLLGTICIAVVIGTY---LIKYSCSGFLAALIT-LLFICLGMKFDCSTLTWEIVFLIAVIAIGLLVRTILVMLVTLSSHINFKEQIVVALSLLPRATFQADLAPT---ALILKAAILSVLITAPIFDIL............ 458
4 -11.200[P] KOG4505 Na+/H+ antiporter  ali follow..  10  6....VEISKPHLAYAIIGGFTSLFMLCSLIIKEKLFLGEATMATATGLIFGPYVA-PTSWGNTDYITEELARVLLVVEVFAAGAEPRAYMLRHWRSMFVMLLPVMIFGWLVSTGFMYALIPRLSFLESLAIAACITATDPVLASSIVGKLRNMLLAESGCNDGMAIPFLYLAIYLI-------------------------IEKPARHAGRDWVCIIILYECTFGCVLGAIIGVIARKMIKFSERRGLMDRESFLVFYFVLALFCGGIGTIIGVDDLLVSFCAGAAF-LSFFVYVGAIMPWPQFHMPHMDLSVWRLVVLAICILIARRIPAVLIINWREALFAGHFGPIGVGALYTCLVARA.................................. 383
5 -11.000[S] COG2855 Predicted membrane protein  ali follow..  15  20.............LALSAVITGVALWGGSIPAVAGAFSALTLAILLGMVLGNTIYPHIWKSCVLFAKQYLLRLGIILYGFRLTFSQIADVGISGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIG--AGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTVAIFLYPAIYPLMSQ--------TVHEVAQVVAAGHAISPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGANSGEKSKITIPWFAILFIVVAIFNSFHLLPQSV--VNMLVTLDTFLLAMAMAALGLTTHVSALKKAGAKPLLMALVLFAWLIVGGGAINYVI............................................................... 344
6 -9.460[E] COG0786 Na+/glutamate symporter  ali follow..  12  1MNQIIS--GALESFLIAISVLFLGHFINAKLPILTKIPEPIVGGLIVACVITA-FHGIDMEFSLPLQNVFMLMFFSTVGLAANYTQLIKGGAKVFLFLAVASVFIIIQNGVGVSLAAGLGLDPLLGLIAGSITLSGGHGTGAAWANTF---AENYGLANTLEIAMASATFGLIIGG---VDKHGIESEYGRGTQTHSRFPELVTYNEYEEDKVTAKKVIEILFILLICVTGAKYLEAWVKTFEIRWLMIPDFVYALFIGVFITNLLEVTKLRKVDA-ETVDILGTVSLSLFLAMALMSLKLWNIFDLAPFLVILAIQSVVLGVFCYFVTFKVMGANYDAAVISA--GLGATPTAVMNMGSVVKR------MVVPIVGAFFIDIVNLIILQGYISFL 407
7 -9.270[P] COG4651 Kef-type K+ transport system, predicted NAD-binding component  ali follow..  12  11.............IVGGLVLAFILGMLANKLRISPLVGYLLAGVLAG---FTPGFVADTKLA-----PELAELGVILLMFGVGLHSLKDLMAVKAIAIPGAIAQIAVATLLGMALSAVLG------WSLMTGIVFGLCLSTASTVVLLRA-GQIAIGWLIVEDLVMVLTLVLLPAVAG------------------------MMEQGDVGFATLAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVLALALGIAFGAVELFDVSGAFFAGMAFAVLFFVSVGMLFDPLILIQQPLAVLATLAIILFGKSLAAFFLVRLFGHSQRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIM............ 378
8 -9.250[P] COG0475 Kef-type K+ transport systems, membrane components  ali follow..  11  9.............VIILLGTAVFIVAILKRFR----LSPVLGYLIAGAAIGDHGLKIVTYDQTKLLGELGVVFLLFAIGLELSFERLKAMRRYV---FGLGSLQVLTTAIVIAGAMVLID------GNSSAAIITGGGLALSSTALVMQV-GRISLAILLLQDLAVVPLLVIVPLLAS--------------------------NNKASLAVALGIAFLKAVTALLTIFIVGRVLLRPVFSFISSESNNTSELPISMTLLIVLSAAWATETFGLSLALGAFVAGVLFLGLFFMTVGMNIDALEMYEKISHILTLSIALICIKTLIITAFCILFGFNKGVAFYSGLLLSQGGEFGFILFSLGKDSGVLEESTADILLLVVTFTMA............ 370
9 -8.400[P] COG0025 NhaP-type Na+/H+ and K+/H+ antiporters  ali follow..  10  2........EIFFTILILILVVSLSGVVTRMLPF--QVPLPLMQIVCGALLAWPNFGLHVNFDPELFLVLFIPPLLFADGWKTPTREFIHHGREILG---LALALVLVTIVGIGYLIYWMVPGIPLVAAFALAAVLSPTVALSGIVGKGRIPKSIMGVLLMNDASGLVALKFAIAVAMG-----------------------TMIFTVSGATLEFLKVAIGGLLAGVAITWLYSKSLRIMSRWSGDDPATQIVLLLLLILAAVAAGMTISQSGIIRNAPLAMRLGMVFILLGLQLPGILETSITQAELDPTIQTWNLFADVAIIYGALLLLRFGDYTTRELWVASFAGVRG---AITLAGVLSIPLFLSDGLVFIATGVILLSVIVIALPPLLRGV. 423
10 -8.290[R] COG3180 Putative ammonia monooxygenase  ali follow..  12  26.............WCLLALLSAVFAGVLEMIGI---AGLLMGPMIAGALVGMNGGTIRLPRQLFFCVQVVLAMMIAASMSPDLLVTFSG----NWLLFLAIILSVIGVSTLCGWTITRMGI--LPGTTAIWGSSAGAASTMLLMADAYGADARLVAFMQYLRVVFVASTATIVSHL--------------------WVSGVEAETATHWFAPIAGLPFFMTLAVGIASGILGKIL-----------------RVPAGAFLVPFAIGSALNITGTLTIELPQWLLALSFAMLGWNIGLGAILAHARRALMPTIVSIVVLISFSGLLALLLIKVAGIDPLTAYLATSP--GGLDSIAVIAASSN.................................. 330

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.