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Query: [S] COG5510 Predicted small secreted protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60
# Score Template Links and tools%idFirst MIKVKFMRSALITSILVAVAFLTSACNTMQGAGQDIQVAGKKLKDSAESNKPQKGCGCPHSSANLast
1 -41.300[S] COG5510 Predicted small secreted protein  ali  100  1MIKVKFMRSALITSILVAVAFLTSACNTMQGAGQDIQVAGKKLKDSAESNKPQKGCGCPHSSAN 64
2 -12.300[R] COG5645 Predicted periplasmic lipoprotein  ali follow..  15  23..EFIMIRNVLLAFMICSGMALLGGCSSVPGTRASATMIGD....................... 72
3 -10.600[N] COG5567 Predicted small periplasmic lipoprotein  ali follow..  10  1......MKNVFKTLAVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKKVDSQTQSTMPDKNDRA. 57
4 -9.850[S] COG4925 Uncharacterized conserved protein  ali follow..  14  4IPEYNGIKWMLICLGVFLLAILATGCIEQNNIDQRAISNQSEMNSSEKTVSTEPEHGLALSEM. 66
5 -9.480[M] COG4238 Murein lipoprotein  ali follow..  13  1.....MKATKLVLGAVILGSTLLAGCSSIDQLSSDVQTLNAKVDQLSNDVN............. 49
6 -8.850[MP] COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance  ali follow..  17  1.....MVKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQSWRGVLPCADCEG... 56
7 -8.420[S] COG4939 Major membrane immunogen, membrane-anchored lipoprotein  ali follow..  16  1...MKLKKVAMGITVVMASSLLLVGCGSSDDSSKDKKSTDTKQTETKKTAKTD........... 50
8 -8.310[S] COG4808 Uncharacterized protein conserved in bacteria  ali follow..  11  3.FYMKAFNKLFSLVVASVLVFSLAGCGD.................................... 29
9 -7.990[R] COG4324 Predicted aminopeptidase  ali follow..  16  2.....RGFRAGVLALSMAGAALLTGCDTVSVTGHSLMAQRQSLDEAIENARQAHDDRLAR.... 62
10 -7.800[H] COG4059 Tetrahydromethanopterin S-methyltransferase, subunit E  ali follow..  14  1..........MVGFTEIGLAAAMGALATIAGAFEDAESDVGSQSNPNSQVQ............. 41
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.