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Query: [R] COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSFTWTAHRFSGGALALDVANSVVMRFDAERRIDRFDDPAAIDTFAEAANLYGAERNRFGTLVPAKSERRNAFIGLREATDRHFRALVRTEDRPDLLADLLEAIATVLRQPADTRKGTPLDVATAHSALGLIAGPERERLKICPNCAWLFLDRSRNRSRTWCDMAVCGNRTKARRHYRRSREEPKPLast
1 -81.600[R] COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding  ali  100  1MSFTWTAHRFSGGALALDVANSVVMRFDAERRIDRFDDPAAIDTFAEAANLYGAERNRFGTLVPAKSERRNAFIGLREATDRHFRALVRTEDRPDLLADLLEAIATVLRQPADTRKGTPLDVATAHSALGLIAGPERERLKICPNCAWLFLDRSRNRSRTWCDMAVCGNRTKARRHYRRSREEPKP 186
2 -10.400[S] COG4530 Uncharacterized protein conserved in bacteria  ali follow..  19  1...................................................................................................................................MAKPELGTKRIDPETGRKFYDLNRD-----SPY--TGKSYPLSFFEETSVAKVLE 51
3 -9.690[U] KOG4173 Alpha-SNAP protein  ali follow..  14  92.............................................................................................................................DALDDYEHHYHTLHGNVCSFCKRAFFQILSERQDMYCLVEGCTTSRDRKDHMVRMHLYPAD 174
4 -9.280[R] KOG4377 Zn-finger protein  ali follow..  20  405.............................................................................................................................................HCRKCDYVCTDSNKVVAHR-CV--TCDSRAQLAAHKHRTGFPKQP 493
5 -8.540[R] COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module  ali follow..  17  18.............................................ADSAVFIMGNCNVDSSLLITVPSVVDELKS-VLRFDLAKEGGLRVEWPEPEMVKEVREKAEQTRDSEELSKTDLEILAKALEHVKPIAQKKIKDVLICIGCKKTFEKGDE------CPI--CGSPLKKKRKKRLKSKSHQE 179
6 -8.500[S] COG4640 Predicted membrane protein  ali follow..  22  1...........................................................................................................................................MKSCPKCG-----QQAQDDVQICT--QCGHKFDSRQALYRKSTDEDI 40
7 -8.090[K] KOG3815 Transcription factor Doublesex  ali follow..  18  19....................................................................................................................................PRAPLQRTPKCARCR--VLSWLKGHKRRFCTCEKC-ERQRVMAAQRRQQANES. 82
8 -7.880[R] KOG2979 Protein involved in DNA repair  ali follow..  11  125...............AVAMMKNIAVQLEKENQTDKVKDLENSVAELLDLHSDCNHRSTAIQSVANRYQPVEQLTDFKKLLDDEFTKLKATPSSVPQNDHLMRQFREAVWNVHHAGEPMNMTCPLSGKPVTELADPVRSMD-----CRHVYLHYIVNNPNANCPVAGCRGKFEIEEMRSLNKQSNR. 325
9 -7.390[S] KOG4850 Uncharacterized conserved protein  ali follow..  28  215.............................................................................................................................................DCLGC---FYACPA------CGSTKCGAECRCDR........... 239
10 -7.340[T] KOG3575 FOG: Hormone receptors  ali follow..  15  50...........................................................................................................................................ASACLGCTVFFISCTYRNACRYCRFQKCGMHSSAIQRRDLVGPRKI. 117

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.