FFAS03 results for COG5516

Query: [R] COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 .`
#	Score	Template	Links and tools	%id	First	`MSFTWTAHRFSGGALALDVANSVVMRFDAERRIDRFDDPAAIDTFAEAANLYGAERNRFGTLVPAKSERRNAFIGLREATDRHFRALVRTEDRPDLLADLLEAIATVLRQPADTRKGTPLDVATAHSALGLIAGPERERLKICPNCAWLFLDRSRNRSRTWCDMAVCGNRTKARRHYRRSREEPKP`	Last
1	-81.600	`[R] COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding`	`ali`	100	1	`MSFTWTAHRFSGGALALDVANSVVMRFDAERRIDRFDDPAAIDTFAEAANLYGAERNRFGTLVPAKSERRNAFIGLREATDRHFRALVRTEDRPDLLADLLEAIATVLRQPADTRKGTPLDVATAHSALGLIAGPERERLKICPNCAWLFLDRSRNRSRTWCDMAVCGNRTKARRHYRRSREEPKP`	186
2	-10.400	`[S] COG4530 Uncharacterized protein conserved in bacteria`	`ali follow..`	19	1	`...................................................................................................................................MAKPELGTKRIDPETGRKFYDLNRD-----SPY--TGKSYPLSFFEETSVAKVLE`	51
3	-9.690	`[U] KOG4173 Alpha-SNAP protein`	`ali follow..`	14	92	`.............................................................................................................................DALDDYEHHYHTLHGNVCSFCKRAFFQILSERQDMYCLVEGCTTSRDRKDHMVRMHLYPAD`	174
4	-9.280	`[R] KOG4377 Zn-finger protein`	`ali follow..`	20	405	`.............................................................................................................................................HCRKCDYVCTDSNKVVAHR-CV--TCDSRAQLAAHKHRTGFPKQP`	493
5	-8.540	`[R] COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module`	`ali follow..`	17	18	`.............................................ADSAVFIMGNCNVDSSLLITVPSVVDELKS-VLRFDLAKEGGLRVEWPEPEMVKEVREKAEQTRDSEELSKTDLEILAKALEHVKPIAQKKIKDVLICIGCKKTFEKGDE------CPI--CGSPLKKKRKKRLKSKSHQE`	179
6	-8.500	`[S] COG4640 Predicted membrane protein`	`ali follow..`	22	1	`...........................................................................................................................................MKSCPKCG-----QQAQDDVQICT--QCGHKFDSRQALYRKSTDEDI`	40
7	-8.090	`[K] KOG3815 Transcription factor Doublesex`	`ali follow..`	18	19	`....................................................................................................................................PRAPLQRTPKCARCR--VLSWLKGHKRRFCTCEKC-ERQRVMAAQRRQQANES.`	82
8	-7.880	`[R] KOG2979 Protein involved in DNA repair`	`ali follow..`	11	125	`...............AVAMMKNIAVQLEKENQTDKVKDLENSVAELLDLHSDCNHRSTAIQSVANRYQPVEQLTDFKKLLDDEFTKLKATPSSVPQNDHLMRQFREAVWNVHHAGEPMNMTCPLSGKPVTELADPVRSMD-----CRHVYLHYIVNNPNANCPVAGCRGKFEIEEMRSLNKQSNR.`	325
9	-7.390	`[S] KOG4850 Uncharacterized conserved protein`	`ali follow..`	28	215	`.............................................................................................................................................DCLGC---FYACPA------CGSTKCGAECRCDR...........`	239
10	-7.340	`[T] KOG3575 FOG: Hormone receptors`	`ali follow..`	15	50	`...........................................................................................................................................ASACLGCTVFFISCTYRNACRYCRFQKCGMHSSAIQRRDLVGPRKI.`	117

FFAS is supported by the NIH grant R01-GM087218-01

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