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Query: [S] COG5521 Predicted integral membrane protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKVPFIIQYVKSTLGPNAIFEGRKVLKFWQMVIVFIFLNALLLLPVSAHFANQSSFDLPSLMPEMATLGTDQFATELSGLSLENGELTDKNAHIVEKSANGVAGVNLTKAELAGAKNIINFKDREMTLTDASGYTFEVSYPKDATLSEITSGESLVDWVSAQWYLENQAFVFLSMVLMIGSIIFVSSLMLAIFTTLFIWMTKRSSFSRIASFKESFNLTLNALGIPVIAACIIGFIYFDITIIMAVQSLGMVLMIAWTFLKTRFYKTSEKSMAASRLast
1 -129.000[S] COG5521 Predicted integral membrane protein  ali  100  1MKKVPFIIQYVKSTLGPNAIFEGRKVLKFWQMVIVFIFLNALLLLPVSAHFANQSSFDLPSLMPEMATLGTDQFATELSGLSLENGELTDKNAHIVEKSANGVAGVNLTKAELAGAKNIINFKDREMTLTDASGYTFEVSYPKDATLSEITSGESLVDWVSAQWYLENQAFVFLSMVLMIGSIIFVSSLMLAIFTTLFIWMTKRSSFSRIASFKESFNLTLNALGIPVIAACIIGFIYFDITIIMAVQSLGMVLMIAWTFLKTRFYKTSEKSMAASR 277
2 -6.380[C] COG3029 Fumarate reductase subunit C  ali follow..  7  1.....................................................................................................................................................MSNRKPYVREMKRTWWKDHPFYRFYMVREATVLPLILFTLFLTVGL-GSLVKGPEAWQTWLDFMANPLVIAINLVALAGSLFHAQTFFSMMPQVV................................. 94
3 -6.320[S] COG4682 Predicted membrane protein  ali follow..  11  3.........................................................................................................................................................DNKISTYSPAFSIVSWIALVGGIVTYLLGLYYFAVLVLGLFSAASYQKTVRDKYEG-IPTTSIYYMTCLTVFIISVALLMVGLWNATLLL-FYGLAFFLSLFGAVAVQKN-IRDAGINPPKETQ 138
4 -6.310[S] COG4818 Predicted membrane protein  ali follow..  8  16........................................................................................................................................................................................ALCYPVGWLSGLFFLLLERKNKFVRFHAMQSVLLFMP------ALFIFLVAWIPTIGWFIADGAGMTAMLLILIPMYMAFRGSKFKIPIIG.. 101
5 -6.140[U] KOG3142 Prenylated rab acceptor 1  ali follow..  10  38...........................................................................................................................................PWKSMFDFESMTLPHGFFDAISRGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRD-LVVFGYQIDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAVTEA. 180
6 -5.770[S] COG3766 Predicted membrane protein  ali follow..  12  16.......................................................................................................................................................................................FSIGLVCFAIFSTIYTRLTPHEEVELIKAGNISAVVAFLGALIGFSLPLASAAAHSVSLPDYVIWAAIGLLVQVLAFYIAKL............ 97
7 -5.690[U] KOG4112 Signal peptidase subunit  ali follow..  13  19...............................................................................................................................................................................................................IDFQGQKVAERTYQVILTIAGIIGFLVGFWTQQLSYAMFTVLGASAFTALIIL................. 71
8 -5.420[U] KOG4490 Translocon-associated complex TRAP, gamma subunit  ali follow..  15  32.....FFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNE---------------------------VADYEATTFSIFYNN----------------------------------------------------TLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALL............................................ 180
9 -5.370[S] COG4854 Predicted membrane protein  ali follow..  9  15...............................................................................................................................................................GGIMRYGKIGVATAMAVGAAVGYAVESGKWFITV-GVALLSLVKRERTVRVGERASRRTVEIFSIGAALSGAVMLALDLHTEAALALEFAVCCVLVLFYGYYSFRALD.......... 137
10 -5.360[S] COG3296 Uncharacterized protein conserved in bacteria  ali follow..  19  16..............................................................................................................................................................................AMIAHLSTFAGYLIPFGNIIGPLVVWLMKKDESEFVNDQKEALNFQISIL-IYVIVSAVLILLLIGIPLLIGVLIFDLVVTIM.................... 98
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.