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current user: public |
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Query: [M] COG5577 Spore coat protein, from VFDB |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . | |||||||
# | Score | Template | Links and tools | %id | First | MQLASHELHDLHELIVSCVNSITNMAMFRNMVQDQDLKNILNSHFPAHIQDYNMKVEFVKKAQGSNQKLNVPNLNVMLQNFTSSPANSFPPIAPRTDVQKMNDREIATAYLLTLKRAGREYAWSAMEMSNPEIRQFLKDAFTMSCNHAYDVWQWMVQKGFYPLSPADQNEQNTISSMYNEVNQPVPTYL | Last |
1 | -81.800 | [M] COG5577 Spore coat protein | ali | 100 | 1 | MQLASHELHDLHELIVSCVNSITNMAMFRNMVQDQDLKNILNSHFPAHIQDYNMKVEFVKKAQGSNQKLNVPNLNVMLQNFTSSPANSFPPIAPRTDVQKMNDREIATAYLLTLKRAGREYAWSAMEMSNPEIRQFLKDAFTMSCNHAYDVWQWMVQKGFYPLSPADQNEQNTISSMYNEVNQPVPTYL | 189 |
2 | -15.800 | [S] COG1633 Uncharacterized conserved protein | ali follow.. | 10 | 17 | ...GIEEAIAL--AIDREKEAREFYLQQAGLMENPKFKELYEELAAEEMKHLGYLENYRDKKELPEISTEVPSGQSF--------SPEFDASRTKVGEITLGDAGILLAAMRHERKSEDFYSEMAKRVEDETQKKFFEMLSRYERGHYEVIDSYLEY................................ | 160 |
3 | -15.600 | [S] COG3544 Uncharacterized protein conserved in bacteria | ali follow.. | 10 | 86 | ......DLRFIDAMIPHHQGAVKMANVAQQKSKRPEIKNLADEIIKAQNQEITQMKQWRTAWYPKAGDKPMAYDAKMGHMMEMSSEQMQAMMMDIDLGAADADLRFINAMIPHHEAAVVMAKDALQKSQRPEIKNLAQEIIKAQDTEINQMKQWRKTWY.............................. | 240 |
4 | -11.900 | [S] COG3652 Predicted outer membrane protein | ali follow.. | 13 | 45 | .MNKTAPQTFVSEASAAGVAEIEAGKMALEKSTAADVKVFAKQMIDDHGKVNAELRSLAERKKLEVEDDASLTDKAKATLLDLRDAS---------------DPAYANNQVAAHEKAVELFTQAADNLTDPELQAFAKTALKHHLEMARALAKAHPSK............................... | 190 |
5 | -11.900 | [S] COG3461 Uncharacterized conserved protein | ali follow.. | 9 | 22 | ..........ALNSLKEEIEAVAWYHQRVVTTKDETVRKILEHNRDEEMEHAAMLLEWLRR................................................................................................................................ | 72 |
6 | -11.800 | [S] COG4902 Uncharacterized protein conserved in archaea | ali follow.. | 9 | 45 | .PLSDEEANSLLYMIEEEKLARDVYLKLYNETGLIIFDRIAQSE----QRHMDAVLMLIEKYNLTAPDTLNEIGVFENEE--------QNLYNELVEMGSQSVVDALKVGALIEEIDIKDLEEWLSKVDNEDIKVVFENLMDGSKNHLRAFTKVLADNYEYTP.......................... | 197 |
7 | -11.200 | [R] COG2406 Protein distantly related to bacterial ferritins | ali follow.. | 9 | 13 | .GVDVDKLLELIKNAAAELTTYYYYTILRANLIGETIKEIAEVARIEDRNHFEALVPRIYELGGKLPDCMKE-------------FHDLSACPPARLPDKPTVQEILRVLVAAERCAVKGYTEICNMTAGKDTYELSLAILNEEIEHESWFSEFLGEGP.............................. | 163 |
8 | -10.600 | [S] COG3685 Uncharacterized protein conserved in bacteria | ali follow.. | 9 | 3 | ...TANEHLWLRDAHAMEEQAITMLTSQSSRLENPELKTRIDRHLQETKDQAAMLERCLERLD--------GGTSSIKDISGKIVAFGQGLSGLFVSDEVVKGTLASYTFEHMEIASYRILIAAAEQAGDQETKRVCESILQQEIAMAEWLAQNAGE................................ | 151 |
9 | -9.110 | [P] COG2193 Bacterioferritin (cytochrome b1) | ali follow.. | 11 | 1 | MKGDTKVIERLNEALFLELGAVNQYWLHYRLLNDTKLAKKERAESIEEMQHADKIIDRIIFLE---------------------GHPNLQTLAPLRIGQNVKE--VLEADLAGEYDARTSYKKSRDICSEAGSMKLFEALLIDEEGHIDFLETQLEL................................ | 140 |
10 | -7.930 | [C] COG1592 Rubrerythrin | ali follow.. | 10 | 1 | MGT----LENLVKAFIGESMARNRYTFYAKVAKDVFIQRVFLETAENEKEHAENLLKFIQQLRGDNAAIKVEAEAPLVWGTTVENLKAAIEGEHYENSEMYPQ-----------------FADEAEKEGFKDIADRLRAIGKAEEHHERRYRRLLAE................................ | 139 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |