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Query: [S] COG5604 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVKLSSIIKARKANALAKKNDKIKKKDTDKGIRQKHSKKEGKDETLKRDVEKFIQNVNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGSSRKRKNLPNENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQDLLEFNAAETDAMAKEIDENERLKSSSGKIVLTSDTIQQWQKLLETNHSLTTLQKVVQAFKAAAFLNEEEAEDLKYTISDSKVFNDLLLLAIQYVPKVLNYHVPIQEDAKGKKFINTDSKVLPKLRPVLKSYGFSILRLLEGMTDAKNISLLLREAQNVLPYMITYRKFLKQFTQATVEVWSSTRDDSVRFSAVVLLRTLCLTADITLLEFVLKEVYLGMARQSAYTTVHTLDKINFLKNSAVNLFLLDAESCYLIGFRYIRQLAITLRNTIHQPSKDSRKPVQSWSYVHSLDFWARLLSQAAWLSREKGVASELQSLVYPLVQIALGVIMSSPSSQLFPMRFHIIRSLIYLSRHTGVFIPLAPSLFEVLDSSYVSRKAKASTLKPLDFDVELRASSSYLRTKVYQDGLIDQLLELLSEYYVLYATDISFPELVIPAIVRSKRFAKRSKNAKLNRGLLTLVNRLEQQSKFMTEKRNQQKFAPIDSDSVEQFAQTIDWQQTPLGIYVVTQRQTREEQRKLIRESVQQDQEHKEQMRQKKKQALKSDDIELDDLSEEEAEDIDELast
1 -119.000[S] COG5604 Uncharacterized conserved protein  ali  100  1MVKLSSIIKARKANALAKKNDKIKKKDTDKGIRQKHSKKEGKDETLKRDVEKFIQNVNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGSSRKRKNLPNENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQDLLEFNAAETDAMAKEIDENERLKSSSGKIVLTSDTIQQWQKLLETNHSLTTLQKVVQAFKAAAFLNEEEAEDLKYTISDSKVFNDLLLLAIQYVPKVLNYHVPIQEDAKGKKFINTDSKVLPKLRPVLKSYGFSILRLLEGMTDAKNISLLLREAQNVLPYMITYRKFLKQFTQATVEVWSSTRDDSVRFSAVVLLRTLCLTADITLLEFVLKEVYLGMARQSAYTTVHTLDKINFLKNSAVNLFLLDAESCYLIGFRYIRQLAITLRNTIHQPSKDSRKPVQSWSYVHSLDFWARLLSQAAWLSREKGVASELQSLVYPLVQIALGVIMSSPSSQLFPMRFHIIRSLIYLSRHTGVFIPLAPSLFEVLDSSYVSRKAKASTLKPLDFDVELRASSSYLRTKVYQDGLIDQLLELLSEYYVLYATDISFPELVIPAIVRSKRFAKRSKNAKLNRGLLTLVNRLEQQSKFMTEKRNQQKFAPIDSDSVEQFAQTIDWQQTPLGIYVVTQRQTREEQRKLIRESVQQDQEHKEQMRQKKKQALKSDDIELDDLSEEEAEDIDE 707
2 -119.000[J] KOG2256 Predicted protein involved in nuclear export of pre-ribosomes  ali follow..  100  1MVKLSSIIKARKANALAKKNDKIKKKDTDKGIRQKHSKKEGKDETLKRDVEKFIQNVNSEDTPSEDDSMSMDAFLEGGFEELDSANSNDAGSSRKRKNLPNENTQDSTSESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQDLLEFNAAETDAMAKEIDENERLKSSSGKIVLTSDTIQQWQKLLETNHSLTTLQKVVQAFKAAAFLNEEEAEDLKYTISDSKVFNDLLLLAIQYVPKVLNYHVPIQEDAKGKKFINTDSKVLPKLRPVLKSYGFSILRLLEGMTDAKNISLLLREAQNVLPYMITYRKFLKQFTQATVEVWSSTRDDSVRFSAVVLLRTLCLTADITLLEFVLKEVYLGMARQSAYTTVHTLDKINFLKNSAVNLFLLDAESCYLIGFRYIRQLAITLRNTIHQPSKDSRKPVQSWSYVHSLDFWARLLSQAAWLSREKGVASELQSLVYPLVQIALGVIMSSPSSQLFPMRFHIIRSLIYLSRHTGVFIPLAPSLFEVLDSSYVSRKAKASTLKPLDFDVELRASSSYLRTKVYQDGLIDQLLELLSEYYVLYATDISFPELVIPAIVRSKRFAKRSKNAKLNRGLLTLVNRLEQQSKFMTEKRNQQKFAPIDSDSVEQFAQTIDWQQTPLGIYVVTQRQTREEQRKLIRESVQQDQEHKEQMRQKKKQALKSDDIELDDLSEEEAEDIDE 707
3 -14.200[J] KOG2147 Nucleolar protein involved in 40S ribosome biogenesis  ali follow..  178LIAKTKLARHEKQQQKDELELMTESLDSKYQALMGKMKASFRPTGRQPLEKDDYDKLTITLKTEADARATPADRKLSEEEEALKEKERLETLEAAPDADVDIDAGSKADARKVQAKNSRFEVKFDDEGGLIDEDTVEKSRILKKNLDGSDESDDDEDLEDEEEDLDDLLEDEDELEEDSDDEEAQEAQKVVKKAKKS--------------APEPAETLPFVFEMPKNYKKFCALLEKHSESMDLVLERLVKCHHPSLKEGNKKR--------LNKLFLLCLRWFDDMSKEE-------------------------------------------------------------------------------LTAESVKEMNLAQETMHALMKFDIQYGVR----CVRALIRQHWKGRQDKQKSSPVSF---GLISAIRLVSGLFPV----------ADSWHPVVVPALFLATEALC-CANLNALAKQIQLANAIVEYVSESKRYVPLVAFARSALLLAVTEKSTRKYTGPALQPISLTTIFNNSPSDPSLKLHVLRALLSLIQHLRVIYSNNETYSIVFKPFLRILESIQAKNLPAEVQEELETLCASMKAEIG--KCRLVHLSLVKTEKSMLKMLEPRFEWDFDP-DEKKKLTKNLRNERRGAIKELRKDTAFLARKQLSSVKTKDRARIAATKRVMGGLMQQQGE 831
4 -13.200[R] KOG2295 C2H2 Zn-finger protein  ali follow..  285..ERKAEQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNLAPSITR............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 528
5 -12.500[R] KOG4264 Nucleo-cytoplasmic protein MLN51  ali follow..  27....GSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKEDEQAPKSRQELIALYGYDIRSAHNPDDIKP....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 255
6 -12.300[K] KOG2478 Putative RNA polymerase II regulator  ali follow..  360..ELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 531
7 -11.800[S] COG4530 Uncharacterized protein conserved in bacteria  ali follow..  1MAKPELGTKRIRKFYDLNRDPIVSPYTGKSYPLSFFEETSVAKVLEKEEEEDVKEVDTENTEVELVSLEEADDEASGGDDLPDLGDDDVEIEGDDDDTFLQTDDEDDDDDMSDIIGVSDEDDD........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 128
8 -11.700[R] KOG4334 Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain  ali follow..  2..............EQESGGKKSNEQLLSEREAIMRQLAMLGSGPEDLDVDDEEEDEEEEVEKMEEGVEETMENASVVKETTPVKDENIVEDSNSSEELFPYLDSPPEDKIQEISANDTEIDQIDSPIRFEGVKNPAQKMDVDGEEGTSTDARPVSGSSGSSVGEQIRAPVPVLKTIMDRIDLDKSNPLPEG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 179
9 -11.500[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit  ali follow..  487.....SLIKQSKVAHDERCKILISSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSRERERDRDRERERDGGRSVRPRKSPEPVVAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAGGSMEKPRGQSAWDIIDTDAH--------------IIKQQTTSIPAPPSSQQNFNIIVL......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 702
10 -11.100[JU] KOG2153 Protein involved in the nuclear export of pre-ribosomes  ali follow..  10  50..KTNKTRKTTKHLNRLAKRKKLSREIRDGMADIKSRKSADLRQRAVNIEDDFIADRQAHYENSDEDLPLDMMDADIDWENSAFANAKRRLEKKRSGVESDSDDEDDVEKKKRKFAGLLEEGHEELLPIKLKDGTLIRPTREKEVKEDEEEKSGDEEEEGEEDEPHREDFSHLSAS---------ELIAKRRELMQEFKDTIASHANMLLSNPQVNIVRLRDLIHSLVRESVQKLAIASTLQVLLDIIREQTAEEKAQKQKKETRNLVNYEESLLRYHLKYLQLCEKLSNKLMGILSVKALARIVVSAPHF-NYSTNIVSSLVRLSLAKNETVIREVCEAIRTVFKEDIHLKITLFTARSISTLVTKRKGRVPPELLRTLLSMNITEVKDEDKKSGKDALIAKKY-ARLEADLLEVEAEESMSKKLKNATEAMKFAFQSYFSILKRMPNSALLEPVLEGLSKFAHEFYEDIVSTMENMVQNENLK-QLHCINTVFVILSGDGQYRLAYRVLNHLPFEKRPEQRKNQIIMAAKTLETMLVIRRKAVPLSRVA-AFVKRLLSIATVL----------DFPALCIVSLVRSLFIA------HPKLSSMIEDEEGGAP------GIYRPDIDDPDVANALASDVRDELSMLARRR........................................................ 726
11 -11.100[J] KOG0650 WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis  ali follow..  1MTKKLALKRRGKDSEPTNEVVASSEASENEEEEEDLLQAVKDPGEDSTDDEGIDQEYHSDSSEELQFESDEEGNYLGRKQSSSAEEDEESSDEEDNEEEESTDGEEVEDEEKDSKSKQTDDKPSGSGAASKKALTAELPKRDSSKPEYQDSDTSDEEDIRNDEYKHIGYDWDAKKIIKPPQGDQIDEFLRKIEDPDFWRTVKDPLTGQDVRLTDEDIALIKRIVSGRI............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 238
12 -11.100[KB] COG5137 Histone chaperone involved in gene silencing  ali follow..  14  115..........................NNEMEGLNLQEMDDAEIKKVKVDISKVWRSILAEKPRVTRFNIQWDNPDFDDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEEIDIEEEEEESALANASAAEEKPEEKPETSQ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 262
13 -11.000[KB] KOG3265 Histone chaperone involved in gene silencing  ali follow..  164.....VFVESNKALHLTSNEDDCSGNYKTCINNSSDSFVENLSRKIETEDLRVTTFPIRWTDEDPVAEPVDEEANKVFDEDDLMPLHDDGQDDDEEEEDDDETGPNTEEVDLNESFNERMANAHDGTEQKNGEESMEHDGASGDVEMGDNQLFVQINTDTKATESMVDPLSDTTKRDFRS............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 338
14 -10.900[K] COG5164 Transcription elongation factor  ali follow..  2..........................SDNSDTNVSMQDHDQQFADPVVVPQSTDTKDENTSDKDTVDSGNVTTTESTERAESTSNIPPLDGEEKEAKSEPQQPEDNAETAATEQVSSSNGPATDDAQATLNTDSSEANEIVKKEEGSDERKRPREEDTKNSDGDTKDEGDNKDEDDDEDDDDDDDDEDDDDEAPTKRRRQERNRFEAEVSDDEDEDEDEEDSELVREGFITHGDDEDDEASAPGARRDDRLHRQLDQDLNKTSEEDAQRLAKELRERYGR--FLLPSVDTATIWGVRCRPGKE--------KELIRKLLKKKFNLDRAMGKKKLKILSIFQRDNYIEAPKQSVIEKFCNGVPDIYISQKLLIPVQE----------LPLLLKPNKSDDVALE-SYVR-----IKRGIYKGDLAMVDQISENNLEVMLKIVPRL........................................................................................................................................................................................................................................................................ 420
15 -10.300[J] COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis  ali follow..  675.........NSEQFTSKKQEEIPVDELFFYRFFNDKYIKGKQARKTKVDRDEEGEIDEDEVWKALVDSKPQLEMDEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMASEEKPMFSDEENLSEIAHSEDEFDDTVDFFEDENDLLPFNETDDEEEIQTVDHSETHSHKKKKRKAIKDADAESYAHLLEN.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 860
16 -9.740[A] COG5183 Protein involved in mRNA turnover and stability  ali follow..  260.....RMVEYLAREMRAHDENRQEQGHDRLNMPAAAADNNNNVINPRNDNVPPQDPNDHRNFENLRHVDELDHDEATEEHENNDSDNSLPSGDDSSRILPGSSSDNEEDEEAEGQQQQQQPEEEADYRDHIEPNPIDMWANRRAQNEFDDLIAAQQNAINRPNAPVFIPPPAQNRAGNVDQDEQDFGAAVGVPPAQANPDDQGQGPLVINLKLKLLNVIAYFI--AVVFTAIYLAISYLFPTFIGFGL-------------------KIYFGIFKVILRGLCHLYYLSGAHIAYNGLTKLVPKVDVAMSWISDHLIHDIIYLYNGYTENTMKHS-LTTYLTSVSIVCASSNLVSRG--NGMSNPTRRLIFQILFALKCTFKVFTLFFIELAGFPILAGVMLDFSLFCPILSRMLWVPSICAIWPPFSLFYW-YMYWFAKYIGMI-----------RKNIIRPLFFPNIKILHDSLI--------PMSIQLSRLCLSMFIYAIFIVLGFGFHTRIFFPFMLKEAYKPTSIISWKFNTILLTLYFTKRILESSSYVKPLLERYWKTIFKLCSRKLRLSSFIL------KDTPTERGHIVYRNLFYKYIAAKNAEWS--KTLEQAEELFGQVRDVHAYFVPDGVLMRVP------SSDIVSRNYVQTMFVPVTKDDKLLKPLDLERIKERNKRAAGEFGYLDEQNTEYDQ 951
17 -9.690[S] KOG1793 Uncharacterized conserved protein  ali follow..  10  47....IYKDESFEAPASPARDSSAPASPSAASPAGSRSPSPSPVKTKSKVMIDSDEDSDAEESANKRALIDSDASDAEGKKRRVMLDSDDSDHEGTSKKEPTTKNLFGDDSDDDDEDRPKKTNDLDEFVEGRDEEESQETSKPAYDSDDDDGPVDRHGRHFEWDFDKMLAEKKAERKKKTRRGGKDGGIDIINDDDGTVSRLVERMKHAAKSDRNANIERKPAFQKIKMLPEVKAIMLRAFMSALSEWLAPLPDKCLPALDIRI----------------TVLKLLHNPRFWKLDRSTLKQLGKAVMMLYKHPN-NKGIANKLIGEWAR........................................................................................................................................................................................................................................................................................................................................................................................... 369
18 -9.630[R] KOG3263 Nucleic acid binding protein  ali follow..  1...MSSSRSGEHRRNYAQGRNYESSRSRGDQRDRDYREYRRNYRDERSSRRYEDSQRRDYSPARRRDRYERHRESVREESPRRPVEHERNWQPELKHGRERFRERDYEGRRDRKERRDGVSPFSPEGEGLERKREHEKLQAPSPKEEEERPVDQGDKMDGVKEDKDGSLEVGKSHDAMTRTKSAEEEIVEQEDE................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 191
19 -9.470[K] COG3343 DNA-directed RNA polymerase, delta subunit  ali follow..  12  81......................................................RSWYAIDEIDEEIITLEEDEDGAQKRKKKRVNAFMDGDEDAIDYRDDDPEDEDFTEESAEVEYDEEDPDDEKSEVESYDSELNEIIPEDDFEEVDINEEDEEDEEDEEP................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 189
20 -9.430[S] KOG4610 Uncharacterized conserved protein  ali follow..  329..KSRQFQSRRKVQDADQNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSSSSSSSDSS.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 523
21 -9.230[S] KOG4051 Uncharacterized conserved protein  ali follow..  236..KTAAPVRKSQRLKRSKEVKFEDEEKEEIEEDNTKDEEQKEKKEEIQEPKITHNEEVDKEKNENEEGDDEREKSTSYENTNGSESEGVDEGVDEELGYESEREAEGKGKQIESEGGNLKKKTENKKGDDQQDDTKKDSKDKNEPLAKRTRHSSSTGNTSNETSPKRKRRKAGSRKNSPPATRVSSRLRNKK................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 425
22 -9.230[R] KOG4095 Uncharacterized conserved protein (tumor-specific protein BCL7 in humans)  ali follow..  12  22MAAIEKVRKWEKKWVTGDTSLRIFKWVPVTDSKEKEKSKSNSSAAREPNGFPSDASANSSLLLEFQDENSNQSSVSDVYQLKVDSSTNSSPSPQQSESLSPAHTSDFRTDDSQPPTLGQEILEEPSLPSSEVADEPPTLTKEEPVPLETQVVEEEEDSGAPPLKRFCVDQPTVPQTASES............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 202
23 -9.210[A] KOG2217 U4/U6.U5 snRNP associated protein  ali follow..  11  1...MGSSSSGKKHKKDKKNRHRSRSSERPRRVTEDEDVTLDLTDDSSSRHRHHKHKKHKEHRHKHHKQKERERANEVISLEESDSDSSDCVEVPVQAQVQAQAKLRDARESSNRDKERDSGRDRELLRERERERDRERERDRDREKEREREREKERLREREEREREREKERIREREKERLRERERERERERVRELTAPPP........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 197

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.