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Query: [S] COG5608 Conserved secreted protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGKVGAIIGIIFLSWLLYSAYFVMNFSPTVRGEWGPMEGNNVEIIFHVDLGNPSPIPVAVQSLNLSLAGVEIGRIEQAKIGIFERSTNVVAVVNLDKIAEALVNHIKDKENSIAEINANIKVLGFIPIKYSKTIPVKTNILSFLQNVTAEPRVYSLGMIPFKTPGIEGIYARWGKVSTKEIELVGTIKLYNPNSFPIPVTNLKADMYMNNIKIGEGRTLKGTILQPNSRGTVDVALTFDVEKLKEAFKEHIRNGERSTVKVDIELVVEVGGAEYEVPIKDIETTFETNILSGIKFALast
1 -89.700[S] COG5608 Conserved secreted protein  ali  100  1MGKVGAIIGIIFLSWLLYSAYFVMNFSPTVRGEWGPMEGNNVEIIFHVDLGNPSPIPVAVQSLNLSLAGVEIGRIEQAKIGIFERSTNVVAVVNLDKIAEALVNHIKDKENSIAEINANIKVLGFIPIKYSKTIPVKTNILSFLQNVTAEPRVYSLGMIPFKTPGIEGIYARWGKVSTKEIELVGTIKLYNPNSFPIPVTNLKADMYMNNIKIGEGRTLKGTILQPNSRGTVDVALTFDVEKLKEAFKEHIRNGERSTVKVDIELVVEVGGAEYEVPIKDIETTFETNILSGIKFA 296
2 -12.000[R] COG5633 Predicted periplasmic lipoprotein  ali follow..  18  1MRK--GCFGLVSLALLLLVGCRSHPEIPGISAEKPVLSTSDIQPSASSTLYNERQEPVTVH---YDARGLEMHPLERPRSVTIPAHSAVTLY............................................................................................................................................................................................................ 108
3 -11.100[S] COG4885 Uncharacterized protein conserved in archaea  ali follow..  12  1MNEKVAAIVIIIASAIAVAVTASKFESYDIDMKLEAVNDSHAVVTFVTEVRKENVEEFAIKAKIYDIQTDLLLNELEETFKSPESRFTAELTIPFE-------------KTRDYKIVLYLQVGDRIYDSYRLTLRNLRNLV-----------------SEDMKLEASLVDSDFLLTSVKNGSVGFVARFYVESVKDYDVV-ARIKVLQADSNVLVGESWKNVTLQKGKTNIVSAEFEVPDDYNYVVKLDVWRNGKLVKLNLAPTKKLSKGEVEKEVDFEAEK.............. 262
4 -8.550[S] COG5430 Uncharacterized secreted protein  ali follow..  6  1MSRHSTSACLLGFATLCASPLLLA-TTSSGTGNFGSLSAQTITGTTGFKCTGSLLSILSTNTIDATIASTANPLGTTPRLYNAASGTYLPYSICKDNGCGTVILGLFNATDGSLPLYLRTATGVTLPAGTYTDTIGLNYDDGTASSSVNVTLTVLKDCFIDSAPDLSFGSAALVSAFTAVNQ-NIGVRCTLNATYTIGFDNIQYNLYKPGDSTVWTTSNTQAGTGSGAAQNVPYRAIVNPAQGNVPAGTY---SDTVRVILT.................................. 314
5 -7.760[S] COG4288 Uncharacterized protein conserved in bacteria  ali follow..  10  34..........................................................................................................................................................................................VCILNAGDEDAHV---EITIYYSD---KEPVGPYRLTVPARRTKHVRFNDLNDPAPIPHDTDFASVIQSNVPIVVQ.................................. 103
6 -7.450[U] KOG3317 Translocon-associated complex TRAP, beta subunit  ali follow..  6  29LQMFKHLLTLFALCAVFSTCLSEDETRARLLVS-KQILNKYLDLLVRYTIFNVGSTKVRLVDSGFHPEAFDVVGGQPTVVDRIAPQTNFTHVLVVR........................................................................................................................................................................................................ 131
7 -7.250[R] COG3895 Predicted periplasmic protein  ali follow..  6  1MKNSYSPAKVVLVALILGGLGLAIPSYAQETQTYYCSPTETLTIKM---VEGSAIQVTLPDGRTVVLPQAESASGNK........................................................................................................................................................................................................................... 79
8 -7.120[N] COG3353 Putative archaeal flagellar protein F  ali follow..  12  8..SYTVAAVIMLSSTLIFFGIKSIYDLENTHVSITGYYYNSSSSLFIVNLTNNGSQVFNMSMANVLINGTMVKFNVSGPY----PLQAVSISFKEPAGTYSLEIVMPDGYEIFREVVS.................................................................................................................................................................................. 141
9 -7.100[E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components  ali follow..  10  1MLKQITAMTAGLLMTIGVAAAAEPESCKTVRFSDVGWTDITSTTAVASTILEALGYAPQSKLLSIPVTYASMKNKDID.......................................................................................................................................................................................................................... 78
10 -6.990[M] COG4238 Murein lipoprotein  ali follow..  9  1MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSD.................................................................................................................................................................................................................................................. 54
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.