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Query: [S] COG5617 Predicted integral membrane protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKRKLYYLTLATISVIEYIPLYLAPSPPALQINGNGHLFKVHKLMTSGWKPWIEDWYAGYPFLRFYPPLSYLTAGVLGKVLGSDTKGYAATLMLTSFLGALALHHYLKSTGREPCISPLIFLLFPWHLTVSYIEGNFPRANAIHLAPLFLLSLYWLREKRERYLIASALGISIVALTHYSILPLLIITGILILWDDLRTMTALGNGIKVLGAVIGLTSFWYVPFLFDKKWVEFWNISENKALFKSFSLNPTLLKSPFGILLILLLLIFAIFAIKNLVDRKKVILAGLYLYLSLGFYSPTTWLYSFPLLSIVPPYRWFDLEALIIPLLIGESLKRVQRKSMVALVIIPFTVLAFMNVPKINPYPQDLIKICENIKEEPGDDWRIFVLTDVGEAINSYLPAICKKPTLNGWYHEGSPTKAGERRMIYILTYGGNLTPYLKAYAVRFLITPKEINGYEMVLRIGKYKVYKGDTSFFQPVSVIVMGKYYELPFDFVYIKDTKIISGQPNVVVLYIGQPSKEEESMLWKFIKNGGTVIWVPETKGEFLGIKAEIRAISNDELRSSLFNVSRFSPFSYNHRSWYAPVFSSNIVRPLISVGNYTLIGEVRIGNGTLYLAGGNLIFHALSYKSSYEISIIRALIGNMDKSTIVNYKLLERSDGRLVAEINSTERTLIRVSEAYYPYWKGYINGREVRLFRDYRTGLMIFTFPRNGTLVIEFKDPFLPLRRYSLVGWIILTAYLVIETGKTYKKRYLHSIFEGRRLast
1 -178.000[S] COG5617 Predicted integral membrane protein  ali  100  1MKRKLYYLTLATISVIEYIPLYLAPSPPALQINGNGHLFKVHKLMTSGWKPWIEDWYAGYPFLRFYPPLSYLTAGVLGKVLGSDTKGYAATLMLTSFLGALALHHYLKSTGREPCISPLIFLLFPWHLTVSYIEGNFPRANAIHLAPLFLLSLYWLREKRERYLIASALGISIVALTHYSILPLLIITGILILWDDLRTMTALGNGIKVLGAVIGLTSFWYVPFLFDKKWVEFWNISENKALFKSFSLNPTLLKSPFGILLILLLLIFAIFAIKNLVDRKKVILAGLYLYLSLGFYSPTTWLYSFPLLSIVPPYRWFDLEALIIPLLIGESLKRVQRKSMVALVIIPFTVLAFMNVPKINPYPQDLIKICENIKEEPGDDWRIFVLTDVGEAINSYLPAICKKPTLNGWYHEGSPTKAGERRMIYILTYGGNLTPYLKAYAVRFLITPKEINGYEMVLRIGKYKVYKGDTSFFQPVSVIVMGKYYELPFDFVYIKDTKIISGQPNVVVLYIGQPSKEEESMLWKFIKNGGTVIWVPETKGEFLGIKAEIRAISNDELRSSLFNVSRFSPFSYNHRSWYAPVFSSNIVRPLISVGNYTLIGEVRIGNGTLYLAGGNLIFHALSYKSSYEISIIRALIGNMDKSTIVNYKLLERSDGRLVAEINSTERTLIRVSEAYYPYWKGYINGREVRLFRDYRTGLMIFTFPRNGTLVIEFKDPFLPLRRYSLVGWIILTAYLVIETGKTYKKRYLHSIFEGRR 756
2 -42.400[S] COG4485 Predicted membrane protein  ali follow..  10  5LKTYRTYFISFIIPVVIMSGVYLSQSIYWNSDDGFHQYVIFDVALRNILHGYTFTSGLG----NFYALSSYYLGSFLAPLVYNMPDAIYLTTLLKFGLIGLSTFFSLNKLFQSKLALSTSYALMSFTVSQLE---------VFILIPLIITGLHLLITEKKLLLYFTSLSIL--FIQNYYFGYMTVLFLIFWYLCQITRKSSVLDFIVISFLAGMASLIMTLPTLFDLQTHGYLDLFAKQFIGSFDTTKYGAIPMIFVGLFPFILTILFFTLKSIKFHVKLIYVIFFAFLIASFYIEALDLFWQGMHTPNMFLHRYAWIFSTLLIYTAAEVLKRLKELKVWNFLVSLFLVVAGFLATIYLKSHYSFLTDLNILFISVNLFAILISLFILVEMSLNASSQMDGIAKEWGFASRSAYSRDIPAMESFSTYIGNQFTRTEKLQNDSMKFNYNGISQFSSVRNRSSSSTLDK-ADSLFGIQYNISDSPIDKYGFKDIYQKDNLTLYENQYSLPIAVASQSNQASFLNQLANVNFDYFSPIPYEKT--SNEDAAIQYQIEVPENSQVYLSFINLHFSNDKQKKVDILVNGEKKTFTTDNVFSFFNLGYTKEKKTFNINVSFPGNQVSFESPTFYRLDTKTFTEAIQKIKEQPVTVSTSKNKVFATYDVQQDTSIFFTIPYDKGWSAYQDGKKIEIKQAQT-GFMKVDIPKGKGTITLSFIPFITGAICSFTSLLLFGIYNHRRKSSK.............. 849
3 -22.500[O] COG4745 Predicted membrane-bound mannosyltransferase  ali follow..  8  7DSSPRVAAAVVAVTAAALLARLWALGWRVAHQDEARVADWTLQYMDLGAWQYRP---------IIHGPFLPHVNGVVFDVFGATDFTMRLVVAVVGGLLPLTAWLYRTRLSDVVGALAVLLAANPVVLY--YSRFMRNDLLLAGFMFTAVGLFVRFLDTHRRYLYASAVPFALAFTTKENSLLYPLCWLGALALVTDDRMAVAGALAGSALTAAVIVVSFYAPTYHEFADLWASTSTVAHSYVAFLSHDLSVLVACGTVVSVAAVVGYLANRYATETPRPLVSFAFYWGVFSVLGYP--------AVVDIAAAWTAVNALAIPAAVGVGAVVRYGRRGAAAGDTAAVRLAVTVLVVSAAGMGAVAAETTYAHPQSPSNPLVQYAQPGGTMQPTIDDIQRAATAT-----------SGLDVLYYGDSNDTADDGLEFSDAGDGTFNVTTGPPSGW---------------------HDRLPFPWYLSQVGANATTVQTAAEVPD-PPVVISVVSEEDDFAALLAAADNSQ-VIYVDTTAVPA....................................................................................................................................................................................................................... 568
4 -20.000[O] KOG2292 Oligosaccharyltransferase, STT3 subunit  ali follow..  9  12VAGYSSLITFAILLIAWLAGFSSRFESIIHEFDPWFNYRATAYMVQNGWYNFLN-----FDERAWYP-LMITSGGIHWLLHVHIRDICVFLAPIFSGLTSISTYLLTKELAGAGLFAASFIAIVPGYISRSVAGSYDNEGIAIFALQFTYFLWVRSVKTGSFWSAAAALSYFYMVSAYVFIINLIPLHVFVLLIMGRYSPRLLTSYSTFYILGLLFSMQIRTSEHMAALGVFVLLMAVATLRHLQSVLSRNEFRKLFIVGGLLVGVGVFVAVVVLTMLGVVAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTFFDLHILVCAFPVGVWYCIKQINDERVFVVLYAISAVYFAGVMVRL............................................................................................................................................................................................................................................................................................................................................................................................................. 407
5 -19.800[R] COG1287 Uncharacterized membrane protein, required for N-linked glycosylation  ali follow..  9  17QKDWKIPLKVLILICIAVASVSSRYESIIHEFDPWFNFRASKILVEQGFYNFRSWYPLGRVAGGTLYPGLMVTSGIIFKVLHLLRINVNIRDVCVLLITAIATYYLARELDACGLLAAAFMGIAPGYTSRSVAGSYDNEAIAITLLMSTFALWIKAVKSGSFWGACTGLLYFYMVTAYVFITNMIPLHVFVLLLMGRYTSKLYIAYTTYYVIGTLASMQVPFVGFQPVSTSEGLLQLFAFYNYVKGLVSSKQFQILIRFALVCLVGLATVVLFALSSTGVIAPWTGRFYSLWDTNYAKIHIPIIASVSEHQPPFFDLQFLIWLLPVGVYLCFKELRNEHVFIIIYSVLGTYFCGVMVRL............................................................................................................................................................................................................................................................................................................................................................................................................. 412
6 -19.100[M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family  ali follow..  11  1MKSVRYLIGLFAFIACYY--LLPISTRLLWQPDETRYAEISREMLASG--DWIVPHLLGLRYFE--PIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFTLRLKRLALLATVIYLSLFIVY--AIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKFLLLGITCGMGVMTKGFLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLTVLFWHYFFWVEHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLPGALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSC-----FA----SLAMLMAHYALLAAKNNPLALRINGWINIAFGVTGIIATFVV............................................................................................................................................................................................................................................................................................................................................................................................................. 363
7 -15.600[S] COG5427 Uncharacterized membrane protein  ali follow..  8  95.......GVFTVAFVFLIVVRAWADGVQPAGGEQFLDFGLLQALDRAGQLPPRDMWFAGERVVYYY--GGQLMASIGHLTDTAPRFAYEPALAGVYAMGCTAAYGLASTIAAGGVLGAFAFGFAPLF---AYLNGDLAHMVSVPVLFVAVAVGVAYYRTPARQWGGFPVAGAAILTVNTWSLPTVFGVAALAVALADPAPQRVLLAVGVAAVGGVLAVVIAWPFVQNVAGWVVAAAAAGAAVAVAVAVGPVVGGVGITAVVLVGPVLGAAWWLRRRNAAGVECVLVAAGAGLVVLVEYVYLADAASYERFNTVFKVYAQVWALWSVAGGVALAGVSERRASTGGLGAVFVVGLVVAASVYGGLAVTTHAAN-----------------------------ADDASLDALEYAGNAHPGEAAAARWLGDRRRGTRIVAAPGVDPY--PAASLSGVPTVAGWAHAANYHSQAAWEQRVDDI------GVVYETTDAASRAAILEKYDVTYVWVGPVERARYEIPDLSADPGIEPVHRTPAV-TIYRVTDDELVAPRSGPITVTTTPQAAT............................................................................................................................................................................................ 802
8 -15.500[S] COG4713 Predicted membrane protein  ali follow..  10  3.KRVVKVEYIFMAFALFFGVLFAVINAPFQDPDEPIHFYRAYQISTGQMFEQKNNSGIGFRSATIYSDIVYIPQSI-KIFRASALYMMYFGRIANLICWTIIVFFSVKLIPFKKNLMAFL-ALTP---MNLYQAASLSDAMTNSMAFLSIALVLRYAFGEERQIVTMIIAFTLLAFSKRIYFVMCILFFIIPIKKFNSKKDYIGTFVIMLGACLMSLVTVYIHILLRTFHFKMSFYAISFIGVFGWLDTRLPLNLYLFYGVALVLIALFEHTLIEKNKDRIIMFIVFIINVGLIMSALYVSWTANIIEGIQ---RYFIPIIPLLGCFIGVKANKSRNVYSKVVLAISTFTILTYSVLQL............................................................................................................................................................................................................................................................................................................................................................................................................. 446
9 -15.200[O] COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase  ali follow..  9  171.................................................................HPFLGKDIIALGMLIEDKPF-YWRIPGIIEHALIVIIVTLVAYKITKSSSIAATFAALDPLLF--ATGIVAMLDIHVAFFIALFMLFLAL------DRIRLSGIALGLAAATKLSGAFAFPILWFKILKEKDLKEYLISGLVLPMVSFLIPEITIIKAIGFIPWLEEFIASFSWHLSFKGEHPSEAPVTDPILMISMIVFVFAVPYVSLRRKGLSEIFWMFWSIIAFFA----LQYILGGKTQFIFYATPLIPPGAVALGVISYEIIKWEYFERSLRIYLNYLRSIAKPLKKVIKR........................................................................................................................................................................................................................................................................................................................................................................................................... 477
10 -13.600[S] COG4906 Predicted membrane protein  ali follow..  11  180NFNRTFAIWSIAISLMWSTVFGVSWNY-IWGYDINGEYYYANLVLARGI--WSISTYDQYNTIA---SVNILGPVYSLILNMWIVPIFKIIYPLVFSLVPVILLKAYERLKIWAELSVLFFMFFFQFFVSN---ALARMMIVEVYLALLAYATI-----RKINPLFLILFLASLAVSHYGTAYLTMFALLTLPLIRVLENEQRISNKLIAVFWVVTLLWYALKDLFNPQYSQGLELIVAKMTFMREIAKLINLFAQGLISIGVLTVLNRLIRGRKVKHLEFYALSFAFFAYDIAGIV------VPYFSNRMNVNRLYHLTQFFIALIGFDSVKRIPLKNSVEIAGVFLVVYFIFTS................................................................................................................................................................................................................................................................................................................................................................................................................ 554
11 -13.200[S] COG3463 Predicted membrane protein  ali follow..  10  7.KKLLVIIFIAYTFIIFKTCLVLYENFSYKSLDLGIFSQSLYSTLN-GKFMYNTVEAQLYSAPNHFQPILLLLLPVYAIM--PSPVVLLLIQAIFLALSATLALLIACEEHREAILVASLYIFNS-----SLLGIALFEFHPVSLAVPLFFIAYMLLKRGKMKLFYLTSVLILLTKED---SFLGVVSLSLWKILMDGLNPESFRKNRGLILLSIASMMYGIIVIKVVIPHLGMG-------YIYESLYSEFELTRRKLLYFIVFNASFGFLTFLSSKGLVSVALPWLESMLSSRDTQT---------MIGFHYPYMLLPLSYLVAIEGFKKSKKVAVSLIVAGILTSMATIPITFKPPKAENPLIHFAVLKPIPGKDASWE---------AITIVKTLEGPIYTQPE--------------FYPHLSTRIDVYVYPKGIKPRVILFRIKLEEYKTVFKKDGVVIFIRKA.............................................................................................................................................................................................................................................................................................. 448
12 -12.500[S] COG5542 Predicted integral membrane protein  ali follow..  11  43....TILYLGIAVIMSHLCVFDDTAMLYLRQNRSRLAESNIFRTLFISWIRWDAIYFNGSLFWAFSSLWPKIISFLAFRSKDVVLLGIVSCFAFFHAIACYALYLLTKSIQKMTAYTVIFYCFSP---SGIYMSVGYTESL---FAAFSFLGLLLFIKKQ---QYPAAFLWSLATLIRSNGIFWCIFFGMPAIGTLKISLERLQLTFMQVSQLVGYGTKCLIILVLIYPAVQEKYWNVGFLRYWTLNNIPNFLFALLSIIPILFALFYSISGSTLHSFRSIKSHLVLSALYLYIGCF---------HMHTQVLNRMSSALPLLYWSMAHATLYAKSRNLKAFGHCILFVWIVYTVI................................................................................................................................................................................................................................................................................................................................................................................................................ 414
13 -12.400[MU] KOG2516 Protein involved in dolichol pathway for N-glycosylation (mannosyltransferase family)  ali follow..  9  1MRWSVLDTVLLTVISFHLI-------APFTKVEESFNIQAIHDILTYSFPGVVPRTFVGAVIIAMLSRPYLYLSSLIQTSRPTSIDVQLVVRGIVGLTNGLSFIYLKNCLQDSAGTWFLLFLIGSFHLMFYSTR-TLPNFVMTL---PLTNVALGWVLLGRYNAAIFLSALVAIVFRLEVSALSAGIALFSVIFKKISLFDAIKFGIFGLGLGSAISIFWQEWCLPEVDGFLFNVVAGYASKWGVEPVTAYFTHYLRMMFMPPTVLLLNYFGYKLAPAKLKIVSLASLFHIIVLSFQP--------------EWRFIIYAVPSIMLLGATGAAHLWENMKVKKITNVLCLAILPLSIMT............................................................................................................................................................................................................................................................................................................................................................................................................. 375
14 -12.200[S] COG5305 Predicted membrane protein  ali follow..  11  47.................................................................HPPLYFVLVHLWMKLFPNSLLAARSFPALLGAVSIPLTYILGRLASLVGQLAAGMMAVSPYAVY--LGQEVRHYTLAMIWVIASLSCLVIATRHIQNRIILWVGINALGIATHYFFTLTLCAEALVLIFLAWQQSTQAKPLWWRIYAVAAGTAVAGLVWLPSI----LENRYRSSLTAWIQVQGIGLHLINPIFQAFAAWVTMIMLLPIESSQLAVVIASGLVMLIFTQVFIGVVLGAIALFFILTY-YNFVYFPAVIILVGASLAVYWQTSKKAVMIIWLMGFVSAVTVICNL............................................................................................................................................................................................................................................................................................................................................................................................................. 389
15 -11.900[G] COG3934 Endo-beta-mannanase  ali follow..  8  295...........................................................................................................................................................................................................................................................................................................................................................................................................................DGSEKMAAKVIKEFSQKTKDIDLSSYKVPRRDSAILVPSWFYRNFQFVPEQDRRWDFARVLNQAFAFAR-----LSNIQVTFVREDDQNLSDYKLLIISVTRLLTTTWRKLLKIVENGTSVYFSTHLWEELFGVMPNNPARGVKIPERVRLLENNLVLDLGQTNMYTYSFEKDAKVIGIDENSNIGVAFLAKRGKGNVILSTVPL--ELISSNYETMKENRISFYNYLAKIANIEQRFPMQNYGVEIQYLEGKGDSLLAVLNHTWEDKEYGLNVGVKEDMDAC-----QGVVRAKSGCLIRV........................................... 597
16 -11.800[MU] KOG2515 Mannosyltransferase  ali follow..  13  16..........WTFSILAVLRLTSASFRVIDDCDEVYNYWEPLHYLGYGLQTWEYSPEYAIRSWFY---VPGFLARGLGLSRLHVFYFIRGVLACFSAFCETNLILAVARNFNRAVALHLTSVLFVNSGMWSASTSFLPSSFAMNMVTLALSAQLSPPSTKRTVKVVSFITIGAVIGW-PFSAALSIPFILLELVDLKGRFRHLFCRWFITGICITVDSLFYFVAWNIVKYNVLAKDGRGPDIYGTEWYYFANLSLQHNIVLWFAMACGPLVLLAAFTNWINLDSFLDLSSVISPFYIWLFIFIIQPHKEERFMYPIYPVLCLAAAIGLDMSLKLMIQVRFVVLCVYAIIGCLSIARILAIQNYNAPMIIYPAISFLETDN........................................................................................................................................................................................................................................................................................................................................................................................ 416
17 -11.800[O] KOG3359 Dolichyl-phosphate-mannose:protein O-mannosyl transferase  ali follow..  8  60LRLESVVMPVIFTALALFTRMYKIGINNHVVWDEAHFGKFGSYYLRHEF------------YHDVHPPLGKMLVGLSGYLAG-DYVKMRLFNASFSALCVPLAYFTAKAIGFSVWLMTVLVLF---NSYSTLGRFILLDSMLLFFTVASFFSFVMFHNQRSKPFSRKWWKWLLIT---------------------------------GISLGCTISVKMV------------------------------------------------------------LFIITMVGIYTVIDL-----------------WTFLADKSMSWKTYINHWLARIFGLIIVPFCIFLLCFKIHFDLLSHSGTGDANMPSLFQARLVGSDVGQGPRDIALGSSVVSIKNQALGGSLLHSHIQTYPDGSNQQQVTCYGYKDANNEWFFNRERGLPSWSENETDI--EYLKPGTSYRLVHKSTGRNLHTHPVAAPVSKTQWEVSGYGDNVVGDNKDNWVIEIMDQRGDEDPEKLHTKNLEMGCYLAQTGNSLPEFLKDFIHLNLAMMATNNALVPDPDKFDYLASSAWQW-----------PTLNVG--LRLCGWGDDNPKYFLLGTPASTWA-------------SSVAVLAFMATVVILLIRWQRQYVDLRNPSNWNVFLMGGFYPLLAWGLHY----MPFVIMSRVTYVHHYLPA----------------YFALIILAYCFDAGLQKWSRSKCGRIMRFVL.... 712
18 -11.600[O] COG1928 Dolichyl-phosphate-mannose--protein O-mannosyl transferase  ali follow..  7  53SHLDTIVMPIIFTVLGMFTRMYKIGRNNHVVWDEAHFGKFGSYYLRHEF------------YHDVHPPLGKMLVGLSGYLAG-DYVKMRLFQAMFSSLCVPLAYFTGRAIGFSVWLFTILVIFEN-----------------------------------------SYATLGKFILLDSMLLFFTVSSYFCLAKFHTMRKSPFSACLTGLNLGCAISVKMV------------------------------------------------------------LFIISVVGIYTISEL-----------------WNLLSDRSVSWKVYVNHWLARIFGLIIIPVCVFLLCFKIHFDLLSNSGPGDSTMPSLFQASLNGTKVGKGPRDVALGSSIISIKNQALGGALLHSHVQPFPEGSEQQQVTVYGYSDANNEWFFQRIRGVEPWTDAENKTI-EFVKGGEMYRLMHRLTGKNLHTHEVPAPISKSEYEVSAYGDVDLGDYKDNWIIEIVEQVGEEDPTLLHPKNSILGCYLAQSGKHLPEFMQLNSAMMATNNAL----VPNPEKFDGIASSAWQW-------------TLNVGVRLCEWSE-KSIKYFLLGSPASVWP-------------SSIAVCALIIHVIFLTLKWQRQCVILSDPVERDVFVMAAFYPLLAWLLHY----MPFVVMSRVVYAHHYLPT----------------YFALMILSYYFDMITKRWATRNTGKFLRLGA.... 706
19 -11.300[MO] KOG1771 GPI-alpha-mannosyltransferase III (GPI10/PIG-B) involved in glycosylphosphatidylinositol anchor biosynthesis  ali follow..  8  1MRIWFWLAILVFRWWNALWV------KTFFQPDEFYQSLEVAHIFRYGFLTW--EWTSAIRSA-LHPLIFAALYRVLQVLKLDFTNAPKLLQGTFAAILDYGTYKFALVRYGSKTANWTLACSLVSIMNAYVGVRTFSNSLETTLTSIGFYYFSYYLKYENSSLLGFISVAAFACFIRPTNILVWIFPLLFWNKNPQTPIKDLLSFVSLFLVNIIADRILY--VFPIISFFQFNVTSGLSSLYGLN----------YYLSQALPLICGGFLPFVLLTMDLQTAGTILCVFFPYSLIG---------------ELRFVYPISPILLTLAGKFFSSFSSWKRAARFFFLIGLGHALVITFL............................................................................................................................................................................................................................................................................................................................................................................................................. 373
20 -11.200[S] COG5650 Predicted integral membrane protein  ali follow..  8  50.......VLITTSLVFLAMGFLTKAN--WSGSRQYTSALYGGRGIDAPGFPYAFSWQEGDLTRYMYPVLGGIFQWICGIITHTLPESGLYFIVTALALAFFWVLVIRMMVELTGNRVWDTVLVAASPLVAVHAFTNW-DTPAIAAVIGAMLAVKR-------------PLVAGVLIGAGTAFKLWPLYLLGAYLVLAVKNKNLKPFITMAAAAAVTWLVVNVPVMIGAEWTTIYQVIDRNLPINLNDPVLLNVLSFGLFGASCVAILILGLKVQRTPRVAELAFLIVAAFLLFNKVWSYSLWLVPLAVLAFPQWKVLFPWMVTDAMVWPILMWHMLGTDNKGLPHEMLDLIVISRDAFI............................................................................................................................................................................................................................................................................................................................................................................................................. 440
21 -11.100[R] KOG2647 Predicted Dolichyl-phosphate-mannose-protein mannosyltransferase  ali follow..  11  12.RKETILIKYAIFSRLLVLFLTILWRSLLQPYDTSAALNNAASRSLENSVVWDSVYFCGYEYYAFLPLLPFFISLLSRTVFAVMVLSGFTVSNLAFIFAAIYLFRVSVIITEASFRASIIFCFNP---ASIFYSSIYSESL---YALFSIGGVYHLLSGT---SNVGVLWFALSGCARSNGILNAGYICFQTMYEALYQKRRAYLAMQVFIAGFLRCICICLPFVA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 267
22 -10.400[S] COG5426 Uncharacterized membrane protein  ali follow..  8  61................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAEALACYDAIVISDIGSNPDALQLIADYVAEGGGLLMIGGYLAEVLPVDMLDVDDRVELPQGCKAVNTAVEHVITQPFSGYNKLIAKENSQVLAEINGDPLLVMGTYHKGKVCCFASDCSPHPQFLQWEHYATFWCNVLHTIK.................................................................................................................... 244
23 -9.940[G] KOG2762 Mannosyltransferase  ali follow..  8  40.CRANLIVMPLLILFESMLCKIIIKKVAYTEIDYKAYMEQIEMIQLDGMLDYSQVSGGTGPL--VYPAGHVLIYKMMYWLTMDHVERGQVFFRYLYLLTLALQMACYYLLHLPPWC--VVLACLSKRLHSIYVLRLFNDCFTTLFMVVTVLGAIVPKLKKSLALVISATYSMAVSIKMNALLYFPAMMISLFILNDANVILTLLDLVAMIAWQVAVAVPFLRPQQYLHCAFNFGRKFMYQWSINWQMMDEEAFNDKRFHLALLISHLIALTTLFVTRYPRLIASNFIGVLFSRSLHYQFLSWYHWTLPILIFWSGMPFFVGPIWYVLHEWCWNSYPPNSQASTLLLALNTVLLLLLALTQLSGSVALAKSHLRTTSSMEKKL...................................................................................................................................................................................................................................................................................................................................................................................... 457
24 -9.590[G] COG1874 Beta-galactosidase  ali follow..  12  447.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DEDLSKYEIVIAVLYMVKSGYADRVKEFVQNGGTFVTTFGELRDLLGIWVEEIDAPEEKNQIVITNDTGSLTGTYECRLLFDIIHSEGADVLAEYGSGTPVITRHAYGKGKAYYVGTCP-------DQAFLTDFMKTVCA------EKEIAPLLNVPKGVEVTERRKDGASYFFIMNH--------NASTVELEIGEGTDLLTTSLEAYGVMIVK............................................ 671
25 -9.570[S] COG4878 Uncharacterized protein conserved in bacteria  ali follow..  9  1..............................................................................................................................................................................................................................................................................................................................................MNIKRNIRIMLTIVLCIAVFFQI-------------------------------------------LRLNFVMNFFKNDKGITNKISYTSAKIPSNTEKEKFLILFDKNEQNSSEIKNNIEQMLKYMKKTA------------------------VVEEKNNVQTVDPSYRAVILTFED-DFKSLSSVMNYAQNGGNVLFALSSISNEIGIKTVSDMGESDGMTLLSNVLIKGNGVNVSKDDYSLKVTLNNNSKLLGIDNKIPMMWQTKFGSGNIMVFNGTILAKKDQRG-TGAISLLVPNYIYPIIDAKLDFPAPIPSGYNSSIYKEYGITTADFYRKVWWPDVLKGSRLYNLKY.................................................................. 307
26 -9.520[S] COG3828 Uncharacterized protein conserved in bacteria  ali follow..  10  24...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IRALLQRNGFDVTLGQGTAMFADPQLSSFDLIVPAITMSEKAELQNLTAAVREGTGLG-SFRNEPDYQFMTGGQWVAHPGNIIDYRVAITQVGDFAYRSEQYYMHVDPSNEVLATTTFTDMPVVWKRRYGAGKVFYSSLG--HTADEFAVPEMALIVERGLLWAAR................................................................................................................... 214
27 -9.450[G] COG4813 Trehalose utilization protein  ali follow..  8  7............................................................................................................................................................................................................................................................................................................................................................................................................................................................TVVWGENIHEHINETVRSIYPNGMHNTIADALNQNPEINATTATLQEPEHGLSQDRLDKTDVLVWWGHKDHDEIVERVAKRVWEGMGLIVFSKPFKRLMGTPCRLWTINPRHPIAAGLP----EHFELENEEMYGEQFSVPEPLETVFISWFRSGLTWRRGAGNIFYFRPG---HETTYHDANVQKVISNSVKWAYNPAGALKSIHDAPNVPVDKALEPIEERGPKLHQAGEAGYR............................................................................ 263
28 -9.100[GE] KOG2575 Glucosyltransferase - Alg6p  ali follow..  10  44....CISLFALLIRSAVTMYPYSGAGIPPKFGDFEAQRHWMEITTNLPVIDWLTYWGLD------YPPLTAYQSYIHGIFLRFF-YLGKLLMRWTVLSSDAFIFFPARGGKSEVAWHIAMILLNPCLILIDHGHFQYNCIS----LGLTVGAIAAVLCESE---VLTCVLFSLALSHKQMSAYFAPAFFSHLLGKCLRRKSPILSVIKLGIAVIVTFVIFWWPYVHSLDDFLMVLSRLAPFERGIYEDYVANFWCTTSILIKWKNLFTTQSLKSISLAATILASLPSMVQQILSPSNE---LLNSSMAFYLFSFQVHEKSILMPFLSATLLALKLPDHFSHLTYYALFSMFPLL.................................................................................................................................................................................................................................................................................................................................................................................................................. 417
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;