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Query: [K] COG5631 Predicted transcription regulator, contains HTH domain (MarR family), from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKTGDGPEAPVDPREAGFEDVTLPKHLRPVASIGPIVSSAHLAEGGSPAMSEVEYGLILASHAFSRWMVRCMAAAGLPGLSPIEILILHSIRHRDREKKLADICLALDIEDTHIATYAIRKLEKAGLLTTGKAAKEKTVKITAKGAEACAHYAQIRERLLVDSTANARPSEETLSELAALLRFMSGAFNQATRSAITLLast
1 -65.900[K] COG5631 Predicted transcription regulator, contains HTH domain (MarR family)  ali  100  1MRKTGDGPEAPVDPREAGFEDVTLPKHLRPVASIGPIVSSAHLAEGGSPAMSEVEYGLILASHAFSRWMVRCMAAAGLPGLSPIEILILHSIRHRDREKKLADICLALDIEDTHIATYAIRKLEKAGLLTTGKAAKEKTVKITAKGAEACAHYAQIRERLLVDSTANARPSEETLSELAALLRFMSGAFNQATRSAITL 199
2 -34.800[K] COG1846 Transcriptional regulators  ali follow..  12  3...........................................NNNPLQSENHASLRLGRLILQLRRLESTPRTFGRAGALTPSEIHTIDAIGTDEG-LLMKELAERLGVT-KGAVSQLVDRLEAKALVRRTAVSRGIQVVLTDKGREAYRAHADMHAAFYEELQQSFT--KEEIAIFEQCVSKLRDILSE........ 149
3 -23.900[K] COG3355 Predicted transcriptional regulator  ali follow..  12  1.....................................................MAEKVRFPDGREVDIHDFIAFMY---GLSKSDVEVLHILLQN-GKMTTDDLSQKLNV-TKASISKALNNLLDKGLIQREKEKEERKGRPNYIYWVEKERLYRKLEADLEKLAGTVKEALQKHTALEIVI................. 127
4 -22.900[KH] COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon  ali follow..  12  1................................................................................MKMKTLFLLIKLAKMGATVTMRELSRELDVS-PQTVLRWLEELKEQGYIHKRESRKGTLVELTEKGINLLEKLYEEISTALYSGFIVGEVIS-GIGEGAYYVRQYAPLIRE........ 114
5 -17.900[K] COG1510 Predicted transcriptional regulators  ali follow..  11  8...........................................................IIEHAEEHLIEKIAENMHTFGMPSTVGRVLGIIYMNRKPMTLSELSEATGMS-KTRMSQVVREMIDANIAEKKGVRKDLYDVEQDYYQTFISLFAANWTKVVSKNKVLYKKLNRELSDLLQRDGLTPEAEEKVNQLLNEL 149
6 -17.700[K] COG3432 Predicted transcriptional regulator  ali follow..  19  40.......................................................................................MFDILRNCEPKCGITRVIYGAGIN--VVAQKYLDQLVKVGALNIKTENDRKIYEITEKGKLLRTHIEE-----FIKIRENLYSAKEKVSELLRTDSE............... 130
7 -17.600[K] COG1695 Predicted transcriptional regulators  ali follow..  14  1................................................................................MDRYAIKALVLL--SKKPRTLYQMSKEIS--SHGTLMPMIRKLLQERYIDFETRGREKVYHLTERGSRFVESLGKIEEDVKQNLISNLLSKNDTSEAIKSAIQILLPAIIAQVEYAFR. 129
8 -17.500[S] COG2512 Uncharacterized membrane-associated protein/domain  ali follow..  22  246................................................................................LSPELCEVLDIIRGHKGRITQKDLRSKLDYS-EVKVSLMLSELEKRGLIRKLRNGRENILVLVDEEH.................................................... 311
9 -17.300[S] COG2469 Uncharacterized conserved protein  ali follow..  12  161.............................................ENGEVITSFVLCPETTMDMLQEYIQNFIKSKPKEKLSEVEEQILTMVYTG---VDSVSVESILGV-TTEELNKMYDRLVNLGLARV--VKIRKEIELTPRGVALVSEIMKKAAR........................................ 269
10 -17.100[S] COG3373 Uncharacterized protein conserved in archaea  ali follow..  15  16.................................................................................SELRRKVLFYLLSYPYRSYLSEISRAVKSD-PSNVKGCLESLIGLGLVIVEQSNGFKYFKINPEIVEEVRNMKNMFSDKKVYTVE................................. 111
11 -15.400[K] COG1497 Predicted transcriptional regulator  ali follow..  21  9.................................................................................ELTRFQILSEIAMRQPYVRQKDIADKLGVT-VQAVSENIKSLIAEGLVESG--SGRSHYKITRRGAEKIKEAAMDLRRYADEVLESMSFYRSVWPAIAW................... 104
12 -15.000[K] COG1321 Mn-dependent transcriptional regulator  ali follow..  20  15......................................................................................TILYLITKNQGPAKTKQIAEELNVS-SPSVTEMIKKLHSMGFVEYKPYQ----VELTEKGAEEAVRIKRKHQVLETFLADVLDFDRKEAHREACELEHAVS............ 111
13 -14.400[S] COG3398 Uncharacterized protein conserved in archaea  ali follow..  10  185.................................................................................NATNQRIISEIQNGKC-NTNLALAREIGVS-RATISWYVKNLKETGLIDETRSGRSIIYSINPSYEPLIEKY.............................................. 254
14 -14.200[K] COG4742 Predicted transcriptional regulator  ali follow..  12  12.................................................................................SQKRRDLLLLL--GEEPRTMEDIKVLLDVS-PTAILPQIKRLTDSNLVIQKNGS----YELTDMGEQVFKKARALVDVLTLGEIKDCNLVKADPSQIFEPNTELLEYFASSRY..... 140
15 -13.700[K] COG5625 Predicted transcription regulator containing HTH domain  ali follow..  14  18...............................................................................GLKKNEIRIYRLLVEKRRGMRIREIQRELGI-SERSVRTHVLNLYRRGLLKREQSGWLGYIYTPVSPLEILQKIKEHLMKSIEELERDLKNQTRS......................... 113
16 -13.500[K] COG2345 Predicted transcriptional regulator  ali follow..  12  15.................................................................................GDTRRKILLIL-LERAPVIASDIAEQLQLS-TVGVRRHLDNLVEENLAEAANPRQAKTYRLTDKGRSIFGHEYDSLAAAALATLREVGGDDAVRQFARKRIETIVEGITPADVTDQSI 141
17 -13.300[K] COG4190 Predicted transcriptional regulator  ali follow..  14  67................................................................................LTPRVLELIEAIRQE-EPASINETARVVDR-DVKNVHEELSRLAHLGIIFFEEDGQRKRPVVW........................................................ 127
18 -12.500[K] COG1733 Predicted transcriptional regulators  ali follow..  3.................................................................QHGYKQFCPLSMAAEVLCTRWTMVLMRELVAGSTRFNDLRRGVPKMSPTLLSQRLKELELAGIVERKGEKGIFDYRLTEAGRDLRPVVEAMGFWGQKWVESRLSLKNLDPSLLMWDMRRN.............. 125
19 -12.500[K] COG1777 Predicted transcriptional regulators  ali follow..  10  14.................................................................................NSTRREIIRMLTQFE-RSYALELSRSIGLS-QQAILKQLEMLERANLVTSIGFVPSKLYEPTGFSTLIVDYGRNFLMIQRIPLENDSERVSVSFDEAISKLESIQHHIEELTKKRTEL 135
20 -12.400[K] COG1378 Predicted transcriptional regulators  ali follow..  14  23....................................................................MDEIIEVLKRLGFRDYEARVYATLATR-GEATASEIHRVSGV-PRNKVYEVLRSLEDRGMIETIKSSPAVFRAIDPE--SVLEEYKEQLVSAVDTAIRSIRESEDFVRGLAGIKNRAKAMLQRSEEVF... 154
21 -11.700[K] COG3682 Predicted transcriptional regulator  ali follow..  10  3................................................................................ITAAEAHVMEAL--RRSPLSADELVAEVGAAGEATVKTLINRLLKKKAIKSERAEGKHGYRPLVDRSAYVQAESQQLAPLISHFAQHRPLKPDEVAKLKKLIDEMGE............ 120
22 -11.600[S] COG4754 Uncharacterized conserved protein  ali follow..  11  17.......................................................................................LLYVMNNFDGKTDLYQLEKEMEV-DIDDLMPIVYTASRLGFVSAESGD----IIVTEEGKEYIRASIKRRKEIIREALRNIEPFRTALDLRNFDCETLMENLSGKHDLEVIL 135
23 -11.200[S] COG4344 Uncharacterized protein conserved in archaea  ali follow..  1....................................................................MSEYEKEIDELINDYDMLRVLKHF-TIAHVDYAKNITRYTEI-PQMRVREYLKRLKDLGLLDYEVHKHHTYYQINKKAEAVLKEITP------KLYVHHLKSADLQMLCSRKERKENPEACSSLLR..... 135
24 -10.800[K] COG1414 Transcriptional regulator  ali follow..  19  21.....................................................................................LDILELLASVDGGLTQAEIAKHLDRS-PNEFYRMLDRLVKRGYVTKLDGDRYSL------TLKLFG-------------LAQLHAPVRRLASFATFMRELADRSKQANQLAV.. 113
25 -10.700[K] COG4738 Predicted transcriptional regulator  ali follow..  12  17...............................................................KMGEVEYEMVELLRRLNINRPVALTLACLSKG-DEISSQRIEMVSGLR-QPEVSIAMRYLRENEWVDMREEKKNKLYKLTVQMETIIDTIEENVIAESKTILQNI----ERLKSLS.................... 133
26 -10.700[K] COG0640 Predicted transcriptional regulators  ali follow..  11  1....................................................................................................MNEITMQTQAD-QPKVSSNLAILSEARLVDSIQMGREKIYRIAPE----------------------------KFEDMVDWLDSILHSKSSGGSANYG. 69
27 -10.400[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  15  20....................................................................................HISVINVL-LREQPIGIIKLSQETGIPE-HKIRYSLRILEQENIISP-----------SREGAILTPDFIEHKEQIIADAEKVLEEATKIAEDVRKMLE................ 105
28 -9.980[K] COG1802 Transcriptional regulators  ali follow..  14  25.......................................................................................IMSGRFTPGERLIERELCETLGVS-RTSIREALRRLEAEKLVSIVPHKGPIVAIISRQEAAELFALRGLLEGFAAREFAQ-RATDVAIVHFAQAIQALRMAGMT........ 126
29 -9.550[K] COG3327 Phenylacetic acid-responsive transcriptional repressor  ali follow..  17  21......................................................................................SLISSLSHRGGEIWLGSLAALLE--GERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAEQPLLLSEGLDKSTLADVKKQLIWQ.............. 133
30 -9.450[S] COG4519 Uncharacterized protein conserved in bacteria  ali follow..  11.....................................................................................LYLALLVESLERP-NVPKLIEKTGW-PRRTIQDVIKAMPGIGIELNFVQHNDGYYQLSDWGPFDSQWVTERKKDIAASL................................... 91
31 -9.230[KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)  ali follow..  10  3...............................................................................RLTEAQQELYEWLRIHQHSPSIRQMMQAMNLKSPAPIQSRLEHLRTKGYIEWTE-GKARTIRVLQP...................................................... 71
32 -9.220[S] COG1693 Uncharacterized protein conserved in archaea  ali follow..  13  1........................................................................MVFLMADETNQKMMEILRILAEHDDVLGAKIIASELRKKGERAVRYHMRILDEKGFTERVGYAGRR---ITEKGLQEIDQVDFIFSKFESMIYNTSFNPDTLEGKVVVNTSRISPRSIETLKHVMR. 133
33 -9.170[P] COG0735 Fe2+/Zn2+ uptake regulation proteins  ali follow..  21  1...........................................................................MVTPQLTKNQSLVMGALAHSDGPMSAYTILDKLRDNGPLQVYRALDKLLEYGLVHR.................................................................... 59
34 -9.050[T] KOG4603 TBP-1 interacting protein  ali follow..  11  1........................................................................MSKGRAEAAAGAAGILLRYLQEQNRPYSSQDVFGNLQ--GKAVVVKTLEQLAQQGKIKEKMYGKQKIYFADQDQFDMVSD-------------ADLQVLDGKIVALTAKVQSLQQSCRYMEAELKEL 117

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.