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Query: [K] KOG0067 Transcription factor CtBP, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MALVDKHKVKRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEFFVTSAPWSVIDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNREHPNEQLast
1 -116.000[K] KOG0067 Transcription factor CtBP  ali  100  1MALVDKHKVKRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEFFVTSAPWSVIDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNREHPNEQ 445
2 -92.800[HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases  ali follow..  23  18.....................APALLIFRSFTMAKVLVSDSID-QVGIDILKQVAQVDV-KTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGSQLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSVKESKWERK-------QFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKLLAYDPFISQERADQIGCTLV-DLDLLFSEADFITLHIPKTPETANLINAETLAKMKPTARIINCSRGGIIDEEALVTAIETAQIGGAALDVFAQEPL--GESRLREFSNVILTPHLGASTEEAQVNVAVDVAEQIRDVLLGLPARSAVNILTPDVMEKLRPYLKLAETLGGGRIDRLTVCLQGDLAEYTNSLVVAAIKGLLSQALRERVNYVNAAIEAKERGIRVIETKDASVR..... 435
3 -88.000[E] KOG0068 D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily  ali follow..  26  82................................KPRILVTEKLG-EAGVNLLREFGDVDC-SYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERS-------KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMTVISHDPYAPADRARALGVDLV-SFDQAISTADFVSLHMPLTPATKKVFNDETFSKMKKGVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEPPS-KDSRLIQHENVTVTPHLGASTKEAQEGVAIEIAEAVAGALKGELSATAVNAVAPEVLSELTPYIVLAEKLGRKGVQSIRVVYRSDRDDLDTRLLRMITKGIIEPISDSYVNLVNADFIAKQKGLRISEERMVVDSSPE.. 496
4 -79.900[CHR] COG1052 Lactate dehydrogenase and related dehydrogenases  ali follow..  25  1...............................MRCVVFNLREEEAPYVEKWKQSHPGVVVTYEEPLTAKNKELLKGYEGLVVMQFLAMEDEVYDYMGKLKVLSTRTAGFDMYNATLLKKHGIRLTNVPSYSPNAIGEYALAAALQLTRHAREIETFVRKRDFR-------QKPILSKELRCSRVGILGTGRIGQAAARLFKGVGAQVVGFDPYPNDAAKEWL---TYVSMDELLSTSDVISLHMPATKDSHHLINAKTIAQMKDGVYLVNTARGAVIDSQALLDSLDKGKIAGAALDAYEFEGPDTVYARLVAHERIIYTPHIAFYTETAIENMVFNSLDACTTVLRGEPCAAEIKL......................................................................................... 331
5 -63.300[C] KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)  ali follow..  16  1........................MCRKSRGAKSPVNNDVVDLAVGSSRRFHKAFKVLISHPNVAPALELLRSRGAETIICQSVPPSRDEILQKVPGLRCVSTMSSGIDFVDIPEFQKRGIPLGHTPGVVKNAVADLAIGLMIAAGRHFHAGRTEIERSQWKIE----QINWMMGQEIRDSVIGFFGFGGISQAIAKRLQCWDVAKIIYHTRTRKENDGDFKAEHV-SFEQLLQESDFLVVAAPLTNETREKFNGKAFNLMKRSSVFVNVARG--------------------GLDVTTPEPLP-ANSPLLNVPNCEGLKMSTTKPFKVLIAHTDVPPEGIEILKEQCEILQVINEKNRPEILEKIRGAHAVIWGGRDILNAEILDAAGPQLKA--------------STMSSGINNVDVPE-LKKRGIPLGSTPAMLTV..... 379
6 -12.100[H] KOG1370 S-adenosylhomocysteine hydrolase  ali follow..  12  80............................................DHAAAAIAKAGISASTGIPVLPLPRLACLEGRNRRGVPVTGDLTNLIHSEYSQLLISKETTIGVHNLKMMVNGILKVPAIDVNDSATKSKFDNLYGCGIKQATDVM---------------------------IAGKVAVVAGYGDKGKSCAQALRGFRASVIITKTDPIKALQAAMEGYEVTTMDEACQEGDVFVT----TTGCVDIILGQHFEQTKDDTIVCNTGYFDVMDVKWLNKNLKNGR-EGRLVNLACAMGHPSFVRSNSFTSQVMAQIKLWTHPDKYPVGVHFLPKKLDESVAE-----GKLNMKLTKLTEKQAQYLGMSC---YCPFKPDHYRY.......................................................... 413
7 -11.800[H] COG0499 S-adenosylhomocysteine hydrolase  ali follow..  13  172.......................................................................AFLGMLREVLAAEPGKWGKIAEAV--KGVTEETTTGVHRLHFAEEGVLPFPAMNVNDAVTKSKFDNKYGTRHSLIDGINRA---------------------TDMLMGGKNVLVCGYGDVGKGCAEAFDGQGARVKVTEADPINALQALMDGYSVVTVDEAIEDADIVIT----ATGNKDIISFEQMLKMKDHALLGNIGHFDNIDMHSLLHRDDVTRTTGRLLNLGNATGHPSFVMSNSFADQTIAQIELFQNEGQYENEVYRLPKVLDEKVAR-----EALGGQLTELTKEQAEYIGVDV---AGPFKPEHYRY.......................................................... 478
8 -11.700[G] COG1023 Predicted 6-phosphogluconate dehydrogenase  ali follow..  17  3......................................................................................................................................................................................LGMIGLGRMGANIVRRLAKGGHDCVVYDHDPDAGEDRTTGVASLRELSQRLSAPRVVWVMVPAGNITTAVIE-ELANTLEAGDIVIDGGNTYYRDDLRHEKLLFKGRERGYCLMIGGDGDAFARAEPIFATVAPGVAAAPRTPGRDGEVAPSEQGYLHCGPCGSGHFVKMVHNGIEYGMMASLAEGLNILRNAD..................................................................... 215
9 -10.700[E] KOG2380 Prephenate dehydrogenase (NADP+)  ali follow..  11  207...............................................LEIFVREGCEMVEMSVTDHDKFAAESQFITHTLGRLLGMLKLISTPINTKLDLAENICGDSFDLGLFVYNNNSLEVLERIDLAFEALRKELFSRLHGVVRKQSFEGEAKKVH--VVKYEYNSQVSGSVNDGSRLKIGIVGFGNFGQFLGKTMVKQGHTVLAYSRSDYTDEAAKLGVSYFSDLDDFEEHPEVIILCTSIL-STEKVLESLPFQRLKRSTLFVDVLSVKEFPRNLFLQTLPQD------FDILCTHPMFGPESAFVFDKVRIGMDDRRKSRCNSFLDIFAREGCRMVEM..................................................................................................... 530
10 -9.990[I] COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases  ali follow..  15  2....................................................................................................................................................................................ETIGFIGLGIMGAPMAGHLLDAGYKVIASDHRSKPADLVAKGLKTVSGHAAVAKAADIIITMVPDTPQVADVLDNGVASGLTRGKLVIDMSSISPIETKVFAGKINELGCD---LDA----PVSGGEVGAKAASLTIMV---EEKAFERAKPVFEKMGKNITLV-VGQTTKVANQIVVALTIEAVAEALVFASKAGADPARVRQALMGG........................................................ 209
11 -9.760[C] COG4074 H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase  ali follow..  12  2..............................................................................................................IDMKLA-GAGCYRTHAASGITNEVAEMVGKPEIAMTHSTITMGAELKELAGVDEVVVADPVFDNQFTVI-EDVIEAHKEDPEKIMPQIREKVNEVAK-----IHFTHPEDLGFEITTDDREAVADADFIMTWFPKGDMQPGII-DKFIDDIKPGAIVTHACTIPTTKFYKIFEEKHG-VTKPETLNVTSYHPG----VPEMKGQVYIAEGYASEEAINTLFELGQKARGNAYRL..................................................................................................... 246

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.