current user: public
If you have questions about the server, please let us know.

Query: [DT] KOG0082 G-protein alpha subunit (small G protein superfamily), from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350
# Score Template Links and tools%idFirst MGSGISSESKESAKRSKELEKKLQEDAERDARTVKLLLLGAGESGKSTIVKQMKIIHKNGYSEQECMEFKAVIYSNTLQSILAIVKAMTTLGIDYVNPRSAEDQRQLYAMANTLEDGGMTPQLAEVIKRLWRDPGIQACFERASEYQLNDSAAYYLNDLDRITASGYVPNEQDVLHSRVKTTGIIETQFSFKDLHFRMFDVGGQRSERKKWIHCFEGVTCIIFCAALSAYDMVLVEDEEVNRMHESLHLFNSICNHKYFSTTSIVLFLNKKDIFQEKVTKVHLSICFPEYTGPNTFEDAGNYIKNQFLDLNLKKEDKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGLFLast
1 -118.000[DT] KOG0082 G-protein alpha subunit (small G protein superfamily)  ali  100  1MGSGISSESKESAKRSKELEKKLQEDAERDARTVKLLLLGAGESGKSTIVKQMKIIHKNGYSEQECMEFKAVIYSNTLQSILAIVKAMTTLGIDYVNPRSAEDQRQLYAMANTLEDGGMTPQLAEVIKRLWRDPGIQACFERASEYQLNDSAAYYLNDLDRITASGYVPNEQDVLHSRVKTTGIIETQFSFKDLHFRMFDVGGQRSERKKWIHCFEGVTCIIFCAALSAYDMVLVEDEEVNRMHESLHLFNSICNHKYFSTTSIVLFLNKKDIFQEKVTKVHLSICFPEYTGPNTFEDAGNYIKNQFLDLNLKKEDKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGLF 354
2 -112.000[T] KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily  ali follow..  49  7MACCLSDEVKESKRINAEIEKQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGAGYSEEDKRGFTKLVYQNIFTAMQAMIRAMETLKILYKYEQNKANALLIREVD-VEKVTTFEHQYVSAIKTLWEDPGIQECYDRRREYQLSDSAKYYLTDVDRIATLGYLPTQQDVLRVRVPTTGIIEYPFDLENIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEDKILYSHLVDYFPEFDGQREPQAAREFILKMFVDLNP-DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 359
3 -105.000[T] KOG0099 G protein subunit Galphas, small G protein superfamily  ali follow..  40  1MGCLGNSEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEALANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQADYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLKSKIEDYFPEFARDPRVTRAKYFIRDEFLRISTASGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394
4 -19.700[U] KOG0077 Vesicle coat complex COPII, GTPase subunit SAR1  ali follow..  18  18..............................QKEAKILFLGLDNAGKTTLLHMLK---------------------------------------------------------------------------------------------------------------------DERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLV----------DAYDKERFAESKRELDALLSDEALATVPFLILGNKIDI-PYAASEDELRYHL----------GLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI........... 192
5 -18.800[R] KOG0075 GTP-binding ADP-ribosylation factor-like protein  ali follow..  20  18..............................KEEMELTLVGLQFSGKTTFVNVIAS--------------------------------------------------------------------------------------------------------------------GQFAEDMIPTVGFNMRKITRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMV----------DAADLDKLEASRNELHSLLDKPQLAGIPVLVLGNKRDL................................................................................. 134
6 -18.700[R] COG1100 GTPase SAR1 and related small G proteins  ali follow..  20  6....................SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI---------------------------------------------------------------------------------------------------------------------GEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVV----------DSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ-PGALSASEVSKELN-----------------------VELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQL...... 183
7 -18.600[U] KOG0070 GTP-binding ADP-ribosylation factor Arf1  ali follow..  25  15..............................KKEMRILMVGLDAAGKTTILYKLKL---------------------------------------------------------------------------------------------------------------------GEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV----------DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL................................................................................. 130
8 -18.500[R] KOG0074 GTP-binding ADP-ribosylation factor-like protein ARL3  ali follow..  25  15..............................DQEVRILLLGLDNAGKTTLLKQLAS---------------------------------------------------------------------------------------------------------------------EDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVI----------DSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDL................................................................................. 130
9 -18.500[U] KOG0071 GTP-binding ADP-ribosylation factor Arf6 (dArf3)  ali follow..  26  19..............................NKEMRILMLGLDAAGKTTILYKLKL---------------------------------------------------------------------------------------------------------------------NQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVV----------DSADSNRISEARQELHRIISDREMRDCLLLVLANKQDL................................................................................. 134
10 -18.400[UZ] KOG0073 GTP-binding ADP-ribosylation factor-like protein ARL2  ali follow..  25  14..............................ERELRLLMLGLDNAGKTTILKKFNG---------------------------------------------------------------------------------------------------------------------EDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV----------DSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL................................................................................. 129
11 -18.400[U] KOG0072 GTP-binding ADP-ribosylation factor-like protein ARL1  ali follow..  25  15..............................SREMRILILGLDGAGKTTILYRLQV---------------------------------------------------------------------------------------------------------------------GEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVV----------DSADRDRIGISKDELLYMLREEELAGAILVVLANKQDM................................................................................. 130
12 -17.900[U] KOG0076 GTP-binding ADP-ribosylation factor-like protein yARL3  ali follow..  19  15..............................KEQYSILILGLDNAGKTTFLETLKKEYSLAFKA---------------------------------------------------------------------------------------------------------------LEKIQPTVGQNVATIPVDSKQLKFWDVGGQESLRSMWSEYYSLCHGIIFIV----------DSSDRERLDECSTTLQSVVMDEEIEGVPILMLANKQDR---------------------QDRMEVQDIKEVFNKIAEHISARDSRVLPISALTGEGVKDAIEWMIVRLERNK....... 190
13 -14.000[T] KOG3886 GTP-binding protein  ali follow..  18  13.....ENLGPRMDPPLGEPEGSLGWVLPNTAMKKKVLLMGKSGSGKTSMRSII-----ANYIARDTRRLGATI----------------------------------------------------------------------------------DRIHSLQINSSLSTYSLVDSVGNTKTFDVEHSHVRFGNLVLNLWDCGGQDTFMENYFTIFRNVEVLIYVF-----------DVESRELEKDMHYYQSCLEA---PDAKIFCLVHKMDLVQED--------------------QRDLIFKEREEDLRRLSRPLECSCFRTSIWD-ETLYKAWSSIVYQLIPN........ 244
14 -11.800[U] KOG0090 Signal recognition particle receptor, beta subunit (small G protein superfamily)  ali follow..  18  51............................RRTKSNTVLLSGLSGSGKTVLFYQLRD-------------------SSHQGAVTSMEPNEGTFVLHNENNTKKG-----------------------------------------------------------------------------------------KVKPVHLIDVPGHSRLISKLEEYLPRAAAVVFVVDALEFLPNIRAASEY--------LYDILTNASVIKNTPVLLCCNKTDKVTAH............................................................................. 185
15 -11.300[U] KOG3887 Predicted small GTPase involved in nuclear protein import  ali follow..  19  55.........................DPFSTEVKPRILLMGLRRSGKSSIQK--------------------VVFHKM--------------------------------------------------------------------------------------------SPNETLFLE-STNKICREDVSNSSVNFQIWDFPGQIDFFDPTFMIFRGTGALIFVIDSQD-----DYMEALARLHLTVTRAYKV------TDINFEVFIHKVDGLSDDHKI----------------ETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQ........ 240
16 -9.060[R] KOG0395 Ras-related GTPase  ali follow..  16  1..............MMKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRF---------------------------------------------------------------------------------------------------------LNGRFEDQYTPTIEDFHRKVYNIRG--------DMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESF----DEVKRLQKQILEVKSCLKNK--AELPMVICGNKNDHGELC----------RQVPTTEAELLVSGDENCAYFE--------------VSAKKNTNVDEMFYVLFSMAKLPH....... 194
FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 7 6 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.