FFAS03 results for KOG0113

Query: [A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily), from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 .
#	Score	Template	Links and tools	%id	First	`MTQYLPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSNGLDARPGRGFGAERRRSRSRERRDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRERERDRDREREKKKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKERKPDFRDMDVIKIKEEPVDDGYPTFDYQNATIKREIDDEDEEKYRPPPAHHNMFSVPPPPILGRGNASTNPNPDNGQQSSGDPSWWRQ`	Last
1	-82.000	`[A] KOG0113 U1 small nuclear ribonucleoprotein (RRM superfamily)`	`ali`	100	1	`MTQYLPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDTPLPKTVETRQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGREDNERERERYRLEREREDREGPGRGGGSNGLDARPGRGFGAERRRSRSRERRDRERDRGRGAVASNGRSRSRSRERRKRRAGSRERYDEFDRRDRRDRERERDRDREREKKKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKERKPDFRDMDVIKIKEEPVDDGYPTFDYQNATIKREIDDEDEEKYRPPPAHHNMFSVPPPPILGRGNASTNPNPDNGQQSSGDPSWWRQ`	448
2	-40.600	`[A] KOG4207 Predicted splicing factor, SR protein superfamily`	`ali follow..`	16	4	`...........................................................................................GRPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEPHTKAPRGFAFVRFHDRSDAQDAEAAMDGAVLDERELRVRMARYGRRDLPRSSQEEPRGRSWGGRYGRRSGSPRGRHRSQSRGPSYSRSRSRSHYGGSRYSLSIYRRSRYSRSPYRRSHYRGSRYGRSPYSRSYSRHHYSRSPYRESRYRRSPYIRSSRSRSPYRRSHSKSGSHSASPSTSKSSS...............................................................................................................................`	233
3	-39.000	`[R] KOG0126 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	12	5	`......................................................................TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTPSPSLSESSEDEKPTKKHKKDKKEKKKKKKEKEKADREVQAEQPSSSSPRRKTVKEKDDTGPKKHSSKNSERAQKSEPREGQKLPKSRTAYSGGAEDLERELKKEKPKHEHKSSSRREAREKTRIRDRGRLQMHILAGIMGVLKGVVIEVEVGAEINPIGIKGPDAPGRGVLRIPVTVGVTEDFSCTVDLE...................................................`	332
4	-32.700	`[A] KOG0107 Alternative splicing factor SRp20/9G8 (RRM superfamily)`	`ali follow..`	17	2	`.....................................................................................................SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARR-----PPGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPYRARDEVPYANGNGLKDVRRSRS...................................................................................................................................................`	196
5	-31.300	`[R] KOG4454 RNA binding protein (RRM superfamily)`	`ali follow..`	12	2	`..........................................................................................EIKPTPSPPEERTIYVANFSEEVDEELLEELFIQAGPVVKVILRDV--RDSNAKFALVEFEDELSVLFAIELMNGVRLFNQELQVKPRNGTNQEELYKRKKGEIEERVRSVAAPDRDGRRDSYRDDRNRNRNGNNRDSWQQQQPPRHHRQYDPLPPPPPPPLMGGSGGHWRSGGERGPPQYSTPQMLPHQHFVNQMMQQQINRSAPPYNGRHQNSTPHRHHDRHGYDRSSSRHHRNDDRRRSAHFLDIRKFQAPPTSWAFGNFQCFFWNLFSKITYLQE...............................................................................`	278
6	-30.100	`[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)`	`ali follow..`	21	20	`...........................................................................................SEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLDDRLIRVDWDAGFVEGRQYGR...................................................................................................................................................................................................................................................................`	117
7	-30.000	`[R] KOG4208 Nucleolar RNA-binding protein NIFK`	`ali follow..`	11	1	`...............................................................................................MAAFSRSAGPILSLNP-QEDAELQKEVAQCDTVTRFRLSRKKRTGNSKGYAFVEFESEDVAKIVTETMNSYLFGERLLECHFMPPEKKMESISKTNHRMSTKGQVLRKKKKKVLGTPD...........................................................................................................................................................................................................................................`	117
8	-30.000	`[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)`	`ali follow..`	28	71	`...................................................................................................EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKSEKRRR..............................................................................................................................................................................................................................................................`	165
9	-29.600	`[R] KOG0114 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	15	1	`.......................................................................................MNKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAK......................................................................................................................................................................................................................................................`	112
10	-28.300	`[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15`	`ali follow..`	19	1	`...............................................................................................MSMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRRNQSYEYTERTDRYMEQQNA.....................................................................................................................................................................................................................................................`	108
11	-28.200	`[J] KOG0122 Translation initiation factor 3, subunit g (eIF-3g)`	`ali follow..`	20	208	`................................................................................................RRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPR...........................................................................................................................................................................................................................................................................`	292
12	-27.600	`[R] COG0724 RNA-binding proteins (RRM domain)`	`ali follow..`	23	186	`................................................................................................ERDDMCTLKIMQVNENADENSLRELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPKVKE........................................................................................................................................................................................................................................................................`	274
13	-27.200	`[A] KOG0106 Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily)`	`ali follow..`	14	4	`.......................................................................................................VYIGRLPNRASDRDVEHFFRGYGKLSDVIM--------KNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFR----DNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDDLRDAMNKLQGEDLNGRKLKCTDETRDRSRSRSPRRRSRSRSPTRSRSPPARRRSPGSDRSDRKSRSASPKKRSDKRARSESKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSPRSGSAS...........................................................`	280
14	-26.600	`[K] KOG4661 Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)`	`ali follow..`	9	364	`...........................................................EVPPAPKESSTSEGADQKMSSPEDDSDTKRLSKEEKGRSSCGRNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSTNLKRDDKCDRKDDAKKGDDGSGEKSKDQDDQKPGPSERSRATKSGSRGTERTVVMDKSKGVPVISVKTSGSKERASKSQDRKSASREKRSVVSFDKVKEPRKSRDSESHSRVRERSEREQRMQAQWEREERERLEIARERLAFQRQRLERERMERERLERERMHVEHERRREQERIHREREELRRQQELRYEQERRPAVRRPYDLDRRDDAYWPEAKRAGLDERYHSDFNRQERFHDFDHR`	752
15	-26.500	`[J] KOG0899 Mitochondrial/chloroplast ribosomal protein S19`	`ali follow..`	15	50	`........................................................................................PVSSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLP.......................................................................................................................................................................................................................................................................`	146
16	-25.700	`[A] KOG2202 U2 snRNP splicing factor, small subunit, and related proteins`	`ali follow..`	16	77	`.............................................................................................................HFEDFFEDLFEELGKFGEIESLNICDNL-ADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKRSSERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWNREREEKEEGGA......................................................................................................................`	296
17	-25.500	`[R] KOG0226 RNA-binding proteins`	`ali follow..`	12	149	`...............................................TQALQSDIDKMNFKKQTDPFKKKIKEQQAKKKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKERNIDVIKQKRKQKKE...........................................................................................................................................................................................................................................................`	298
18	-25.300	`[A] KOG4209 Splicing factor RNPS1, SR protein superfamily`	`ali follow..`	14	33	`........................................................EIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLTPEEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNAL-AMTDSLLRGRQIKVDPKRTNKPGMSTTNR..................................................................................................................................................................................................................................................................`	165
19	-24.600	`[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)`	`ali follow..`	14	68	`.........................................................HGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVT..................................................................................................................................................................................................................................................................`	198
20	-22.700	`[A] KOG4676 Splicing factor, arginine/serine-rich`	`ali follow..`	14	33	`.....................................................................................................EVIQVTNVSPSASSEQMRTLFGFLGKIDELRL-DDSPLPVSSRVCFVKFHDPDSAVVAQ-HLTNTVFVDRALIVSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGDSLRESKVNGDDHHEEDMDMSD`	484
21	-22.300	`[A] KOG4206 Spliceosomal protein snRNP-U1A/U2B`	`ali follow..`	16	3	`..............................................................................................TADIPPNQSIYIQNLNERIKKEELKRLFSQFGRILDVVALK---TPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAE...................................................................................................................................................................................................................................................................`	98
22	-21.600	`[A] KOG4849 mRNA cleavage factor I subunit/CPSF subunit`	`ali follow..`	11	94	`......................................................................................................QLYVGNLTWWTTDQDIANSLRDIGDLQEVKFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQFESLQKTRPVPPPQQNGSRNRTVSSSAIARAVSDAAAGEYSSAIETLVTAISLIKQSKVAHDERCKILISSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSRERERDRDRERERDGGRSVRPRKSPEPVVAEAAEAPSSKRYYEDRERYRSSDRER-RDRDRDRDRERERDRDRHFTNDGRGLPLDPSNFTSQNPGNIKTGRPKSAAVAGGSMEKPRGQSAWDIIDTDAHWIIKQQTTSIPAPPSSQQN.`	696
23	-21.400	`[R] KOG0149 Predicted RNA-binding protein SEB4 (RRM superfamily)`	`ali follow..`	23	12	`.........................................................................................HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD-PTPIIDGRRANCNLASLGRPRPPLPYAV.................................................................................................................................................................................................................................................................`	112
24	-20.900	`[R] KOG1457 RNA binding protein (contains RRM repeats)`	`ali follow..`	15	81	`.........................................................................................LFVHELKTRPGVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLT----ARQPVGFVIFDSRAGAEAAKNALNGIRFDPENLRLEFAKANTKMAKS.....................................................................................................................................................................................................................................................................`	177
25	-19.600	`[A] KOG2217 U4/U6.U5 snRNP associated protein`	`ali follow..`	14	1	`.......................................................................................................................................................................MGSSSSGKKHKKDKKNRHRSRSSERPRRVTEDEDVTLDLTDDSSSRHRHHKHKKHKEHRHKHHKQKERERANEVISLEESDSDSSDCVEVPVQAQVQAQAKLRDARESSNRDKERDSGRDRELLRERERERDRERERDRDREKEREREREKERLREREREREREKERIREREKERLRERERERERERVRELTAPPPPQISKHAEYESRREREIERERDARKRSGRERERERNRERSRSQSPASSSRKPATKEREPSSRSFSPIPENGAGDVLSITETNKLR`	282
26	-19.600	`[A] KOG0105 Alternative splicing factor ASF/SF2 (RRM superfamily)`	`ali follow..`	22	2	`.........................................................................................SGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNR---HGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSD.......................................................................................................................................................................................................................................................`	110
27	-19.300	`[D] KOG2186 Cell growth-regulating nucleolar protein`	`ali follow..`	24	408	`.....................................................................................................RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKR-MYNRIVVCNLASEKPGKA.......................................................................................................................................................................................................................................................................`	490
28	-19.300	`[A] KOG0144 RNA-binding protein CUGBP1/BRUNO (RRM superfamily)`	`ali follow..`	19	387	`...........................................................................................AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK.......................................................................................................................................................................................................................................................................`	480
29	-18.400	`[A] KOG0146 RNA-binding protein ETR-3 (RRM superfamily)`	`ali follow..`	20	43	`..........................................................................................PSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTMNRPIQVKPADSESRGGSSCLRQPPSQDRK..........................................................................................................................................................................................................................................................`	153
30	-18.200	`[A] KOG1190 Polypyrimidine tract-binding protein`	`ali follow..`	9	1	`...........................................MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPRGQPIYIQFSNHKELKTDSSPNQARA..............................................................................................................................................................................................................................................................`	147
31	-17.800	`[S] KOG4610 Uncharacterized conserved protein`	`ali follow..`	9	310	`...........................................................................................................................................................................................................................................RLYVVNAEFWKNRRESRMAKSRQFQSRRKVQDADQNSIYMISNERGGDVKKKIKRAKDKDYAEQEAVYSKKKKDKKDKKKRKRKDTGYSTASSQNLYSTKASGTDKDTRRKDKKGKKSKRTCSSSPSDCDLAKKQKRKNADKNDKKKSRKIEAVVEESSSSSSSSSDSSNSTLPSYEVIDEKKARRRKHRGSSSDTSSGDSSSSSSSSSSSDS`	522
32	-17.600	`[A] KOG0145 RNA-binding protein ELAV/HU (RRM superfamily)`	`ali follow..`	19	293	`.................................................................................................TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS.......................................................................................................................................................................................................................................................................`	380
33	-17.600	`[A] KOG0533 RRM motif-containing protein`	`ali follow..`	11	71	`..................................................................................................SKVIRVNISNLAPTVISSDLEELFGDYR-LSSVSVNFNE-HGDSLGTGDISLT-KRDAERLVQKFSGVALDGKIMKFAVIDSSNMAGRVDFGNRSRSSPGRSSRGFQSGPRRNNGKPEDFLRDGVHAGDIKRGGAGRGGFRKGGRGGARDAKPKKTEAELDAE...........................................................................................................................................................................................`	230
34	-17.300	`[AJ] KOG0148 Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)`	`ali follow..`	12	54	`............................................................HEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP.......................................................................................................................................................................................................................................................................`	178
35	-17.100	`[A] KOG4212 RNA-binding protein hnRNP-M`	`ali follow..`	17	643	`...........................................................................................GHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA...........................................................................................................................................................................................................................................................................`	730
36	-16.800	`[K] KOG4210 Nuclear localization sequence binding protein`	`ali follow..`	24	236	`..................................................................................................PPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSSS........................................................................................................................................................................................................................................................`	337
37	-16.800	`[A] KOG0124 Polypyrimidine tract-binding protein PUF60 (RRM superfamily)`	`ali follow..`	18	144	`.......TIRQAFAPFGPIKSID-WDSVTMKHKGEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEA-------------------RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP........................................................................................................................................................................................................................................................................`	308
38	-16.100	`[TR] KOG4019 Calcineurin-mediated signaling pathway inhibitor DSCR1`	`ali follow..`	7	2	`............................................................................................EEVDLQDLPSATIACHLDPRVFVDGFESLFRTYDKDITFQYF------KSFKRVRINFSNPFSAADARLQLHKTEFLGKEMKLYFAQTLHIGS.......................................................................................................................................................................................................................................................................`	93
39	-15.800	`[A] KOG0131 Splicing factor 3b, subunit 4`	`ali follow..`	20	12	`........................................................................................NLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGAN..................................................................................................................................................................................................................................................................`	113
40	-15.600	`[R] KOG0110 RNA-binding protein (RRM superfamily)`	`ali follow..`	15	322	`...........................................................KNKVTKASKSGQPLAPAAVDAGNAKWKHQQDSLSKEDDISESGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTLDGTDFHGRLLHLLPSKDIEKNPKEDLDENDAS.............................................................................................................................................................................................................................................................`	457
41	-15.400	`[A] KOG0120 Splicing factor U2AF, large subunit (RRM superfamily)`	`ali follow..`	18	199	`.............................................................................................STVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNA.......................................................................................................................................................................................................................................................................`	290
42	-15.300	`[R] KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains`	`ali follow..`	8	7	`.....................................................................................................................................................................................................................................NADDDGKRVQNEEGNYDPTDHQRQMEDYYKQYEEQRQVANSFHNTTGRPDLVAMQARLAETEQAIHRLNEEKKQPPPGFPIMTTPATQPEISIPRSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHWSSSNRHSRRRRSRSYSRERDRNSRRDDRRSNLSNNDRYSDWNPGVPSNK`	225
43	-14.900	`[K] KOG1548 Transcription elongation factor TAT-SF1`	`ali follow..`	12	54	`.............................................SDVTAEATEGKESSNGEDRHTKRLYESTSAEGYPSGSRNKKSKSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTTEDGTPKGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKK.......................................................................................................................................................................................................................................................`	216
44	-14.800	`[A] KOG0128 RNA-binding protein SART3 (RRM superfamily)`	`ali follow..`	11	640	`...........................................................ENDQKAQQALLKDRVPVKGRPMFISANDPEKRVGFKFSTTEKSKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHK-DGKPKGIAFVDFDTEASAQKCVASGDKLMLRERELEVALSNPPVKKDKSHGKPAAIGASLEEDGPRKGHAAKLQLVPRAITNKTPQITARLDAMDVSEGTSTSQPLSNDQ........................................................................................................................................................................................................`	828
45	-14.600	`[AJ] KOG0123 Polyadenylate-binding protein (RRM superfamily)`	`ali follow..`	18	2	`............................................................................................NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSG....................................................................................................................................................................................................................................................................`	97
46	-14.500	`[Z] KOG3809 Microtubule-binding protein MIP-T3`	`ali follow..`	16	143	`.....................................................................................................................................................................................................................TSRSQELDNKNVREEESRVHKNTEDRGDAEIKERSTSRDRKQKEELKEDRKPREKDKDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERDRDSERKKETERKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDREKNREHDKPEKKSASSGEMSKKLSDGTFKDSKAETETEISTRASKSLTTKTSKRRSKNSVEGRKEDNISAKSLDSIVSGINNEP`	377
47	-14.400	`[K] KOG0147 Transcriptional coactivator CAPER (RRM superfamily)`	`ali follow..`	26	243	`.................................................................................................NGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGG.......................................................................................................................................................................................................................................................................`	330
48	-14.400	`[R] KOG4733 FOG: RRM domain`	`ali follow..`	16	51	`..........................................................................................SSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTN..........................................................................................................................................................................................................................................................................`	142
49	-14.200	`[R] KOG0118 FOG: RRM domain`	`ali follow..`	16	173	`.....................................................................................................RTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGD--PNSVLRFAFIEFTDEEGAMTAL-NLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCART.....................................................................................................................................................................................................................................................`	271
50	-14.200	`[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)`	`ali follow..`	19	230	`.....................................................................................................TTLYVGNLPEEITEPELRDQFYQFGEIRSIALVPR------QQCAFVQYTKRNAAELAAERTNKLVIQGRKVSIKWAHSQAKQGTAAKTDRR...............................................................................................................................................................................................................................................................`	316
51	-14.200	`[T] KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains`	`ali follow..`	12	201	`.........................DNVVNDKSNGVDAPKKSFAHIVQDLAQNGATFNAKASPAKPKSKPVTKPSAARESKAPAPVSEHSSAATIDQQAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQKESAIRIGNRRVSIEEKRGNNDNGRPAMRNGGYRNDNGYRNDGYRPRGNGSNGGRGYGRNGSERRGESRNGEAHNGDGKVHQNGTVEASR.....................................................................................................................................................................................................`	428
52	-13.200	`[R] KOG3263 Nucleic acid binding protein`	`ali follow..`	15	2	`..............................................................................................................................................................................................................................................................SSSRSGEHRRNYAQGRNYESSRSRGDQRDRDYREYRRNYRDERSSRRYEDSQRRDYSPARRRDRERHRESVREESPRRPVEHERNWQPELKHGRERFRERDYEGRRDRKERRDGVSPFSPEGEGLERKREHEKLQAPSPKEEEERPVDQGDKMDGVKEDKDGSLEVGKSHDAMTRTKSAEEEIVEQEDEATAEM`	196
53	-13.100	`[A] KOG0117 Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)`	`ali follow..`	17	15	`............................................................QKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCR........................................................................................................................................................................................................................................................................`	137
54	-12.900	`[R] KOG2140 Uncharacterized conserved protein`	`ali follow..`	7	656	`...................................................................................................................................................................................................AQKPDVEQNKSSPSSSSSASSSSESDSSDSDSDSSDSSSESSSEESDSSSISSHSSASANDVRKKGHGKTRSKEVDKLIRNQQTNDRKQKERRQEHGHQETRTERERRSEKHRDQNSSGSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKRGERRNSFSENEKHTHRIKDSENFRRKDRSKSKEMNRKHSGSRSDEDRYQNGAERRWEKSSRYSEQSRESKKNQDRRREKSPAKQK`	908
55	-12.700	`[O] KOG0314 Predicted E3 ubiquitin ligase`	`ali follow..`	11	514	`...........................................................................................................................................................................................................................KKTEMKRKRENEIRRSEGGNVVRDSEKSRIMNNSAVTSSPVKPKSRQGPPPPISSDYDRRRRSDRSSPERQSSRRFTSPPRSSSRKSERDRHHDLDSEHDRRRDRPRETDRKHRKRSEKSSSDPTVEIDDNNKSNVFTRISFPEESSGKQRKTSKSSPAPPESSVAPVSSGRRHHSRREREMVEYDSSDDEDRHFKRKPSRYKRSPSVAPSDAGDEHFRHSKRSKGERA`	742
56	-12.500	`[K] KOG2068 MOT2 transcription factor`	`ali follow..`	14	57	`...............................................RTPYDKEKIVGMTVDQERLASEGNMDRKKIQKSKPKSSDGRKPLTSVRVV--QRNLVYIVGLPLNLADEDLKEYFGQYGKVLKVSMSRTQQFPNNTCSVYITYGKEEEAIRCIQSVHGFILDGKALKACFGTTK...........................................................................................................................................................................................................................................................................`	196
57	-12.300	`[K] KOG2478 Putative RNA polymerase II regulator`	`ali follow..`	11	333	`......................................................................................................................................................................................................................................................SKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD...`	531
58	-12.300	`[T] KOG1882 Transcriptional regulator SNIP1, contains FHA domain`	`ali follow..`	7	2	`..........................................................................................................................................................................................................................................KAVKSERERGSRRRHRDGDVVLPAGVVVKQERLSPEVAPPAHRRPDHSGGSPSPPTSEPARSGHRGNRARGVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVKQEREDHPRRGREDRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSGQGQGRDRDTQNLQAQEEEREFYNARRREHRQRNDVGGGGSESQELVPRPGGNNKE`	215
59	-12.200	`[A] KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1`	`ali follow..`	14	35	`...........................................................................................DDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN-REHELDGKKIDPKVAFPKRTQAKLVTKTKK...............................................................................................................................................................................................................................................................`	135
60	-11.900	`[R] KOG2888 Putative RNA binding protein`	`ali follow..`	11	225	`.......................................................................................................................................................................................................................................STGRSTAGTGGGPGAAGQDADYQDYPEGGVERGSGGRGGGQAGSRSNAYPQPNNYRNDYDERDYYAAASGSSYGRGRGGYEDYPPAPLPPQMPYGERERERDRDRDKNKDYDRHRSKHKKKHNHRQSSRSRSRSRSRSRHRSERHERKRDGGGYERSSKSRHNEHYEERERRHR...........................................`	398
61	-11.900	`[A] KOG0115 RNA-binding protein p54nrb (RRM superfamily)`	`ali follow..`	16	123	`....LPNELKELFSP----------------------------IAECYLSGK----DTRAHAESAKEAIDGRIIHGRQVRVR---------------AVHGAAIRVKELSPTVSNEMLYHAFSHFGDVERAVHIVD-EKGRPTGEGIVEFERKPNCNEAMAAIRDKVFSPKPLICEVLEPRDEDD.......................................................................................................................................................................................................................................................................`	275
62	-11.800	`[K] KOG3152 TBP-binding protein, activator of basal transcription (contains rrm motif)`	`ali follow..`	14	2	`.....................................................QSEESHELTDGISEEKESKETMKSQKADRKKKKLKEKLLKEASKADNRGVCYLSRIPPHMDHVRLRHILAQYGELGRIYLAAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQIGGKKKS..................................................................................................................................................................................................................................................................................`	143
63	-11.800	`[S] KOG2889 Predicted PRP38-like splicing factor`	`ali follow..`	15	170	`............................................................................................................................................................................................................................................................ALEEVDMLPSYKSLLDGDLVAMSDSDSEEEEVTKKEKPRLTSRRRSRSRDRERDVGDRREVREREKLKERRERGDDEPGPSSSGSGRRDDRDDRRRDRDRSRDRDRRDRRDDDRRDKKKESRRGGADNDEEREIAEANALRAKLGLAPLER.............................................`	320
64	-11.700	`[A] KOG4211 Splicing factor hnRNP-F and related RNA-binding proteins`	`ali follow..`	9	18	`....LPDEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVEL---------ESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEVRT.......................................................................................................................................................................................................................................................................`	193
65	-11.600	`[K] KOG3794 CBF1-interacting corepressor CIR and related proteins`	`ali follow..`	7	334	`.................................................................................................................................................................................KKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRVIGEQVR`	604
66	-11.500	`[R] KOG1995 Conserved Zn-finger protein`	`ali follow..`	13	277	`..................................................................................................CDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYEKGNYKGDACLAYEDPSAAHSAGGFFNNYEMRGNKISVTMAEKSAPRAPTFDQSFIILVGNMSFCNAKFMFLVSEDCLDLVSYWGFALYTHLGMTERMSVSDLIMLSLQTCECRRGGGRGGGGGGYGGGGGDRRRDNYSSGPDRNHHGGNRK...............................................................................................................................................................`	480
67	-11.300	`[S] KOG4051 Uncharacterized conserved protein`	`ali follow..`	5	210	`........................................................................................................................................................................................................................................KEVQSDEKELQREHMSEEEQKMKSTNKTAAPVRKSQRLKRSKEVKFEDEEKEEIEEDNTKDEEQKEKKEEIQEPKITHNEEVDKEKNENEEGDDEREKSTSYENTNGSESEGVDEGVDEELGYESEREAEGKGKQIESEGGNLKKKTENKKGDDQQDDTKKDSKDKNEPLAKRTRHSSSTGNTSNETSPKRKRRKAGSRKNSPPATRVSSRLRNKK`	425
68	-11.100	`[S] KOG3869 Uncharacterized conserved protein`	`ali follow..`	10	193	`.......................................................................................................................................................................................................................................AAEGKKKNKKNKKSKKSKKKKKNRRSSNEESSDSESNDSDDDLDRKLARQVSKLKGDQGDLKLDKLLDAKYRTISNQLDMATKKKKSKKSKKKKSSDSSDESSDEEEEPRRKHKRSHSSEDRNQRERRRSRSPRDRKKRQSRSPEQRQRQRSPEERRERRRSRSRSPLARRQRRTRSPEDRKARRQSKDTSKQREKRRSRTPEERSRSKRSRSRSSK`	409
69	-11.000	`[O] KOG0415 Predicted peptidyl prolyl cis-trans isomerase`	`ali follow..`	15	150	`.....P-RISHTIVLDDPFDEDARISFPPRSPSPTYEM------LTDQIALDEKEDEDEGKTAEEIAEELQQREMAEQAQILEMVGDL----KDADEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFSQSVSQNYKYKPKSQQQEAPKRRQSPQRRPEVKRSHQRSPSPRRRRSPSPKKDKKRDYRREPARRRR............................................................................................................................................................................................................`	381
70	-10.500	`[P] KOG4505 Na+/H+ antiporter`	`ali follow..`	9	419	`......................................................................................................LVLSSIIVHGSSIAFFMLGKRINTLALSFTRTRDSHFAFNLPRVRQGQSLPIKRVDALRSSANSIASSIRRRHPVNIQEDEDADISTVSLPEAAHLREERAESPRGGHYDAEEFPSEDYESRQPRRSNEEDREEEMNPGDETYLIGEDLVVEDSQGNIISHTSSRDANGPSIDEKLAQGDPKAKSFGRKFRSFLRRSYDTFQRNLHEPDDERQREPTLGHIESSIENHRPRYSRQNSESHLRENSVERRRREQVLTNIGDSESEDDNIPRPGIVPFYNENNESSSDTRNGLLSDNVSESRSRRPSRAPSAAVSSEGSPVEEDNEAQHRPNIRFLELTRAWE.....`	759
71	-10.500	`[A] KOG2253 U1 snRNP complex, subunit SNU71 and related PWI-motif proteins`	`ali follow..`	10	37	`...............................................................................................................................................................................................................YSHSFVPSIRFISIILKLLPLLMNTNEIAIDAAAVAQGAEKELHDDREAKNRPEASKRSRRSRSSSNSSSESDSSSSRSSSYSSRSRSRTPQRSRTSKRRRSNSHASDSDDAREKRAFKQMMLDKKQAYLARLKRWESRERQMSKRYEREERKEKDRKKTLQKEGKRLKLFLEDYDDEKDDPKYYTSSQFFQRKRDYEREREADQKDRMQEQQEIEELKRQIMEEAANDESINIEEEARKR`	278
72	-10.400	`[A] KOG0796 Spliceosome subunit`	`ali follow..`	11	258	`..............................................................................................................................................................................................................................................................DSDRRLADHFGGKLHLGYMLIRDKLAELQEEKNKVHKERVEERRSKERSRERESSKDRDGGDNRDRGRDVDRRSRDRDRHHDHREHDRNYNQSRGDSRSRRSSRSRSRERPRDHDRRRRHDR........................................................................`	380
73	-10.300	`[R] KOG2295 C2H2 Zn-finger protein`	`ali follow..`	10	161	`........................................................................................................FLDTQDENISDSEVMRKYTEY-DFKRQQLNEFFVAHKDEEWFKNKYHPEDSVKRSEEQRGFLQRRTDVFMELLENGTIGSVKVDSSQADALIRVLDTCVIKLEGGTDEDLKVLDEKPKDPVVYERKAEQMQSVKEVEKTINSPKEEMSEADPVSTQRKPVRPVNSDGENWDDDDAENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKD`	505
74	-10.200	`[A] KOG2548 SWAP mRNA splicing regulator`	`ali follow..`	10	726	`............................................................................................................................................................................................................................KRKMQNLLNRQYKADKRAEIEKTERERLQQQEREDEMRELALKLRRRRRELRHKYGTPSSGKLSDSDAESVASESQLAKSSTRRSRSRSESRRRSPPPETQHSRRSSSRTERRRRTRTPSPKYNRRQRSRSRSGSRVERKRRSHSRRRSGSRDRRRSRSRRSQSRRRRQRDRSIERNREREQYRQQHQQQNERLRGRDRDREADYGHGGSGSSNRGRVVISAPPKLKK`	953
75	-9.990	`[S] KOG2812 Uncharacterized conserved protein`	`ali follow..`	10	88	`.........................................................................................................................................................................................................................................................RGIPFASASSSVYYGSYSRPYGSDKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKKSTTSASTSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKYSEDSDSDSDSETDSSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSKKSRKESSDSSSKESQEEFLENPWKDRTKAEE`	286

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

Comments and questions to: webmaster