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Query: [J] KOG0458 Elongation factor 1 alpha, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAYSDYSDGADDMPDFHDEGEFDDYLNDDEYDLMNEVFPTLKAQLQDYQGWDNLSLKLALFDNNFDLESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISISQQRPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQLast
1 -146.000[J] KOG0458 Elongation factor 1 alpha  ali  100  1MAYSDYSDGADDMPDFHDEGEFDDYLNDDEYDLMNEVFPTLKAQLQDYQGWDNLSLKLALFDNNFDLESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISISQQRPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 611
2 -111.000[J] KOG0459 Polypeptide release factor 3  ali follow..  28  1................................................................MDLEAEIRAL--QLESADENNGVVIPEVHNSHEVENLDKAPEDLKDEVQESIPVPDEQEASEDHDEVMLHPVHNPAKAKEKAAQEKAAKEEAEDVAEANKKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTNEEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLIVVVNKMDTVNWSKERYDEIEQKMVPFLKASGYNTKDVVFLPISGLMGKNMDQRMGQEI-CPWWSGPSFFEVLDSIEIP------PRDPNGPFRMPIIDKFK-----DMGTVVMGKVESGSIREGDSLVVMPNKEQVKVVAIY--------CDEDKVKRAGPGENLRVRITGIEDEDILSGFVLSSIVN-PVPAVTEFVAQLQILEDNAIFTAGYKAILHIHAVVEECEIIELKSQIDLKTRKMKKKVLFVKNGAAVVCRI---QVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKVTELLS 527
3 -109.000[J] KOG0052 Translation elongation factor EF-1 alpha/Tu  ali follow..  29  1................................................................................................................................................................MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKNASGKTLLEALDSIIPP------QRPTDRPLRLPLQDVYK---IGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVE--------MHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKVEDFPKFLKSGDAGIVEL---IPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEK 443
4 -101.000[J] COG5256 Translation elongation factor EF-1alpha (GTPase)  ali follow..  31  2..............................................................................................................................................................KIMASQKPHLNLITIGHVDHGKSTLVGRLLYEHGEIPAHIIEEYRKEAEQKGKATFEFAWVMDRFKEERERGVTIDLAHRKFETDKYYFTLIDAPGHRDFVKNMITGTSQADAAILVISAREGEGVME-----QTREHAFLARTLGVPQMVVAINKMDATSYSEKRYNEVKADAEKLLRSIGF--KDISFVPISGYKGDNVTKPSPN---MPWYKGPTLLQALDAFKVP------EKPINKPLRIPVEDVYS---ITGIGTVPVGRVETGVLKPGDKVIFLPADKQGDVKSIE--------MHHEPLQQAEPGDNIGFNVRGIAKNDIKRGDVCGHLDT-PPTVVKAFTAQIIVLNHPSVIAPGYKPVFHVHTAQVACRIDEIVKTLNPKDGTLKEKPDFIKNGDVAIVKV---IPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEK 426
5 -99.200[P] COG2895 GTPases - Sulfate adenylate transferase subunit 1  ali follow..  27  2.............................................................................................................................................NTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGN-LDIRFVPLSALEGDNVASQSESMP---WYSGPTLLEVLETVEIQ------RVVDAQPMRFPVQYVNR---PNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIV--------TFDGDREEAFAGEAITLVL--TDEIDISRGDLLLAADE-ALPAVQSASVDVVWMA-EQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLT-QREVENLPLNGIGLVDLTF---DEPLVLDRYQQNPVTGGLIFIDSNVTVGAGMVHEPVS 439
6 -73.200[J] KOG0460 Mitochondrial translation elongation factor Tu  ali follow..  21  1..................................................................................................................MNSAKATSLLFQGFRKNCLRLNRISFASGLINRFTVPARTYADEKVFVRKKPHVNIGTIGHVDHGKTTLTAAITKCLS---------------DLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVE--PDMIELVEMEMRELLSEYGFDGDNTPIVSGSALCALEGREPE-----IGLNSITKLMEAVDSYI-----TLPERKTDVPFLMAIEDVFS---ISGRGTVVTGRVERGTLKKGAEIEIVGYGSKTTVTGIE--------MFKKQLDAAVAGDNCGLLLRSIKREQLKRGMIVAQPG--TVAPHQKFKASFYILTRRTGFVDKYRPQLYSRTSDVTVELTHP---------DPNDSDKMVMPGDNVEMICTL---IHPIVIEKG------QRFTVREGGSTVGTALVTELLD 439
7 -64.500[J] COG0050 GTPases - translation elongation factors  ali follow..  23  2............................................................................................................................................................SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KTYGGSARAFDQIDNAPEEKARGITINTSHVEYDTPARHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLGRQVGVPYIIVFMNKCDMVD-DEELLELVEMEVRELLSAYDFPGDDLPVVRGSALKALEGEAEW-------EAKIIELAGYLDSYI-----PEPERAIDKPFLLPIEDVF---SISGRGTVVTGRVERGIVKVGEEVEIVGIKDKSTCTGVE--------MFRKLLDEGRAGENVGVLLRGIKREDIERGQVLAKPGS--IKPHTTFESEVYILSRHTPFFKGYRPQFYFRTTDVTGTIELP------------EGVEMVMPGDNINMIVTL---IHPIAMDDG------LRFAIREGGRTVGAGVVAKVIA 394
8 -59.600[J] KOG0466 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase)  ali follow..  13  2...............................................................................................................................AGGEAGVTLGQPHLSRQDLTTLDVTKLTPLSHEVISRQATINIGTIGHVAHGKSTVVKAI---SGVHTVRFKNELERNITIKLGYANAKIYQLDDPSCPRPECYRSCGSSMPDEFPVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQP------QTSEHLAAIEIMKLKHILILQNKIDLVK--ERQAKEQYEQILAFVQGTVA--EGAPIIPISAQLKYNI---------------EVVCEYIVKK------PVPPRDFTSEPRLIVIRSFDVNKPGCEGGVAGGSILKGVLKVGQETEVRPGIVSSKIVSLF--------AEHNDLQYAAPGGLIGVGTKTLCRADRMVGQILGAVGA-LPEIFTELEISYFLLRRLLGVRTEGDKKAA----KVQKLSKNEVLMVNIGSLSTGGR---VSAVKADLGKIVL---TNPVCTEVGE------KIALSKHWRLIGWGQIRRGVT 464
9 -50.800[R] COG5258 GTPase  ali follow..  17  8...................................................................DGNVEYKLTLGPQDVDRMAGQLKRRLAEGGGEAVYLIGVSNDGRPLGLPDEELVKALETLREMARRVGASLYILRVSEGIRGKVAEVLLRAVSREEPPPTVTVVALGNVDAGKSTLVGVLTTDGKGLARSYASRYKHEVLTGRTSAVSLRLLGFSGDKVVNHGLIDPLDEAEYKRSDKLVLLVDVGGHERYLRTALRGLFQPDYVMLVVAANSGVQ-------KMTKEHLGIAVAIGIPVFVV-VTRIDIT--PSEVFQKTVEEVVRILKMPGVSKIPYPVFYVSSVTGHGL---------------DLLLRFLSLL-----PRRRRWDYGGEFLMYISDIY---LVKGVGVVIGGLVEKGILHVGDRVWLGPYSDQTVVKSIH--------FNRTPVESAKAGSFITVALDKVEK--VEKGMVLSA---RPLKAVREVTADVLVLRHPTVIRAGFSGVFHYKAVRTGGYIKEI-------------DKGELMVGDSGVVKIEL---SRPWHIDS-------GVFVFRN-GPTRILGRIIGT.. 511
10 -44.600[J] COG5257 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase)  ali follow..  19  2..................................................................................................................................................................KNQSEINIGLVGHVDHGKTTLTKAL---SGVWTDTHSEETKRGSIRLGYADITFRKCPQCEAPMCYTTAEICERCGTETELLRKVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPC--------PQTKEHLMALDVIGVKDVIVVQNKIDIVS--KERALESYREIKEFVKGTCAEDAPI--IPVSAQQGANI---------------DILIETIEER------KTPKRDVDKPARMYVARSFDINKPGADGGVIGGSLVQGRLRVGDEIEIRPGIQVKKDGKQTHSTITGLVAGGEEMEEVGPGGLVGVGTLALTKADSLSGSVAGEPGTLP-PVRHSFTMETHLLEKVEPIKTGEPLMINVGTTTTVGVVK---------------------SARADDADVVL---KLPACAEEGQ------RIALSARWRLIGYGIIK.... 408
11 -44.500[J] COG3276 Selenocysteine-specific translation elongation factor  ali follow..  20  1.......................................................................................................................................................................MIIVTSGHVDHGKTALLKAL---------------------TGTST-------AHLPEEKKRGMTIDLGYAYLPLENKVLGFIDVPGHEKFLSNMLAGLGGVHYAMLIVAADEGVAV-------QTKEHLAILRQLQFHEIIVVITKADRTN--SAQIESLIQTIKQDYSFL----RNANYFVTSAETGQG----------------------ISELRHYLANLAELADTQKPFRYAIDRVF---SVKGAGTVVTGTAFSGTVKVNDEIYL-STGQKIRIKAIH--------AQNTSSEQGIAGQRLALNLNALDRTPMKRGDWLLQNEP--LPPTDRISVQI---LAEVPLNESQPVHIYHGASRTTGKLTLL-------------QGKNAAKNDRTLAEIILDSPLFLAFGD---------KLILRSGDTLIAGARVLE... 342
12 -33.200[T] COG1217 Predicted membrane GTPase involved in stress response  ali follow..  17  3....................................................................................................................................................................ENLRNIAIIAHVDHGKTTLVDKLLKLSGTLDRKEAESER---------------VMDSNDQEKERGITILAKNTAIKWNGYNINIVDTPGHADFGGEVERVMSMVDSVLLVVDAQDGP-------MPQTRFVTQKAFKAGLR-PIVVVNKIDRPG---ARPDWVIDQIFDLFDNLGATDEQLDF-PISALNGIAGLDHEKMDD----NMDALFQAIIDHVPAPVVDT------EGPFQM----ISQLDYNSFLGVIGIGRITRGKVKSNTPVVAISDDGSKRNGRILK--MGHHGLQRVEVAEAEAGDIVCVS----GMEELFISDTLCDPQNVEALPPLTVDQPTVSMTFQVNDSPAGREGKFVTSRNIKERLEKELLHNVALRVEPGDSPEKFKVSGRGELHLSV........................................ 368
13 -32.000[J] KOG0462 Elongation factor-type GTP-binding protein  ali follow..  20  20................................................................................................................................................KHYSTAGDPTKLVNLSEFTPDKIRNFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQ------------------MLDKLQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQGV-------QAQTIANFWLAFEKNIQ-IIPVINKIDLPG---ADIKSVETQLKNL-----FEFNPEECLHISAKSGLNV--------------DKVLEAIIDRVPAPTA------IIDAPFRS----IFDSYFDHFRGAIAHIMVKEGSVKKGDKIQSYQNEKVYDVSEVGVMRPEMVKC--TELRAGQVGYLVCN-MRTVN--EAVVGETLFAETTSVKTFAEIKGVKPTVYAGLFPVETSDYESLKQAVERLCLNDPSVTVIPDSSKALGLG---RIGFLGVLHMEVFGARLSQEYDASVILCQPSV...................... 403
14 -29.100[M] COG0481 Membrane GTPase LepA  ali follow..  18  2....................................................................................................................................................................KNIRNFSIIAHIDHGKSTLSDRLIQTCGGLSDREMEA-----------------VLDSMDLERERGITITLNYKAKDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGV-------EAQTLANCYTAIEMNLE-VVPILNKIDL---PAADPERVAEEIEDI-----VGIDAMEAVRCSAKTGVGI--------------EDVLEEIVHKIPAPEGDP------NAPLQALIIDSWFDNYL---GVVSLVRIKNGTLRKGDKIKVMSTGQSYNVDRLGI--TPKQVDTTILNCGEVGWVVCAIK----DILGAPVGDTLTSHNNPASSVLPGFK........................................................................................................ 289
15 -26.000[J] COG4108 Peptide chain release factor RF-3  ali follow..  13  3..........................................................................................................................................................MSTTPYFGEVSKRRTFAIISHPDAGKTTITEKVLLFGRAI--------QVAGTVKGRGSNQHA-KSDWMEMEKERGISVTTSVMQFPYGDCLVNLLDTPGHEDFSEDTYRTLTAVDSCLMVIDAAKGV-------EDRTRKLMEVTRLRDTPIVTF-MNKLDREIRDMELMDEVENELAQLREELELVLGASELTPVTALGNFGV---------------DHMLDGLTQWAPSPMPRQAAERVEEKFTGFVFKIQANMDPKHRDRIAFVRIVSGTYKQGMKMNHVRLGKQVNISDAVT-----MAGDRARAEEAFAGDIIGL----HNHGTIQIGDTFTQGETLKFTGIPNFAPELF-------------RRIRLRDPLKQKQLLKGLVQLSEEGAPLQNNDLIVGAVGVLQFDVVVSRLKSEYNVE.............................. 462
16 -24.600[J] KOG0468 U5 snRNP-specific protein  ali follow..  10  3......................................SDLYDEFGNYIGPDLDSDEEDEQSIYGQPDVQDDPEDAMDEDEVEPQEDEDKEVTAVVLHEDKRYYPSAVEVYGPDVETIVQEEDAQPLDKPLIEPVKKLKFQIKEQDMQETTYDMEFMADLMDTPPLIRNVALVGHLHHGKTTFVDCLIRQTHPQFETMEERQLR--------------YTDTLFTEQERGCSIKATPVTLKQKSYLLNIFDTPGHVNFSDEATAAMRMSDGVVLFIDAAEGV---------NTERLLKHAVQERQAITVC-INKIDRLILEYFKLKHIVEEVNGLLSTYGAPDDNLLVSPILGLWGDMYFNSKTRKFSKK---CSGFVDMCVEHIKSPLENAKRKNQYGTLMVHSSKMY--PNDDCTFFQVLARIVSGTLHAGQEVRVLGENRILQVGRLWVFESRYK----VELNRVPAGNWVLIEIDQCIVKTSTIVDINVPEDLYIFRPLKFNTQSII------------KIAVEPVNPSELPKMLDGLRKVNKSY----------------LLSTRVEES---------------GEHVILGTGELYLDCVMHDLRK 649
17 -24.300[J] KOG0469 Elongation factor 2  ali follow..  14  5........................................................................................................................................................TVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETR---------------FTDTRKDEQERCITIKSTAISLKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV---------QTETVLRQAIAERIKPVLF-MNKMDRALLELQL-EELFQTFQRIVENINVDPSIGNVGFGSGLHGWAFTLKQFAEMYAGKFG-DTMLQMIFHLPSPVTAQKYRKTCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGKVATGMKARIQGPNYEKTIQRTILMMGRFI----EPIEDIPSGNIAG--LVGVDQYLVKGGTITTYKDAHNMRVMKFSVSPVV------------RVAVEAKNPADLPKLVEGLKRLAKSDPMVQ-----CIFEESGEHIIAAGELHLEICLKDLEE--DHACIPLKKSDPVVS......... 572
18 -21.700[J] KOG0465 Mitochondrial elongation factor  ali follow..  13  46..............................................................................................................................................EEEKVLVDEIKQKLTPDDIGRCNKLRNIGISAHIDSGKTTFTERVLYYTKRI------------KAIHEGRDNVGAKMDSMDLEREKGITIQSAATYCEGKNYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGV-------QSQTVTVDRQMRRYNVPRVTF-INKMDRMGSDFRAIEQLNSKLEMFLEEKEPTTQQISFTPVSALANTGI---------------QPVLDAIVDYLPNPSENEAKVNLVPAVQQPFVGLAFKLEEGKYGQLTYVRVYQGRLRKGNYITNVKTGKKVKVARLVRMHSSEM----EDVDEVGSGE-----ICATFGIDCASGDTFTDGSVQYSMSSMYVPDAVVSLSITPNSKDASNFSKALNRFQKE---PTFRVKFDPESKET-----IISGMGELHLEIYVERMRREYNVDCVTGKPQVS..................... 544
19 -21.600[J] COG0480 Translation elongation factors (GTPases)  ali follow..  14  2..............................................................................................................................................................ARINPLEKVRNIGIAAHIDAGKTTTTERILFYSGII--HKIGEVHEGTA-----------VTDWMDQERERGITITAAAISTSWKDYQINIIDTPGHVDFTIEVERSMRVLDGVIAVFCSVGGV-------QPQSETVWRQADRYKVPRIAF-INKMDRTGANYRVHEQMRDRLSKYFDGEPLTEEEITIVPVSAFKNKGV---------------QLMLDAVVDYLPAPLPNGDAIERRADDNEPLAALAFKIMADPYGRLTFVRVYSGVLKKGSYVLNATKNKKERISRLVLMKADDR----QDVEELRAGDLGAA----LGLKDTLTGDTITDEGAPVILESLFIPEPVISVAVE-PKTKNDMDKLSKALQSLSEEDPTFRVNVDPETNQT-----VIAGMGELHLEILVDRMLREFKVEANVGAPQVA..................... 478
20 -20.900[J] KOG1145 Mitochondrial translation initiation factor 2 (IF-2; GTPase)  ali follow..  13  183.........................................................................................................................................................................VTIMGHVDHGKTTLL------------DKFRKTQVAAVETG-------------------GITQHIGAFLVSLPSEKITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMK-------QTVESIQHAKDAQVP-IILAVNKCDKAEADPEKVKKELLAYDVVCEDYG---GDVQAVPVSALTGDNL-------------------ALAEATVALAEMLELKADPNGPVE-----VIESFTDKGRGLVTTAIIQRGTLRKGSVLVA--GKCWAKVRLM---------FDENGKTIDEAYPSMPVGITGWRDLPSAGEEILEVESEPRAREVVDWRKKEQIPLKPKEKRERDSNVLSV-KGDVDGSVEAILNIIDTYDASHECELELVHFGDISANDVNLAETFDGVIYGFNVNAGNVIQQSAAKKGVKIKLKIIYRLVE 604
21 -18.200[E] COG4917 Ethanolamine utilization protein  ali follow..  18  3........................................................................................................................................................................RIAFVGSVGAGKTTLFNALQGNYTLARKTQ------------------------------------------AVEFNDKGDIDTPGHPRWYHALITTLQDVDMLIYVHGANDP----------ESRLPAGLLDIGVSKRQIAVISKTDMPDADVAA-------TRKLLLETGFEEP---MFELNSHDPQSV---------------QQLVDYLASLTKQEEAGEKTHHSE..................................................................................................................................................................................................................... 159
22 -17.600[J] COG0532 Translation initiation factor 2 (IF-2; GTPase)  ali follow..  18  448.........................................................................................................................................................................VTIMGHVDHGKTTLL------------DRFRESRVTEGEAG-------------------GITQHIGAYQIKANGKKITFLDTPGHEAFTSMRARGASVTDITILVVAADDGVMP-------QTIEAINHSKAAGVP-IIVAINKIDKPGANPQRVTQELTEHGVFPVAWD-PENGSEFVEISAKFNQNL---------------DELLDTVEVQELKADPTVRAIGT----------VVEARLDQGKGAIATLLVQQGTLHVQDPIVV--GNTYGRVRTM---------TNDLGRRIKEAGPSTPIELTGLSDVPQAGDHFAVFEDEKAARAAGEERARVNLDNLFDTLKEGQTKSVNI-KADVQGSAEALAASLQKEVEGVKVDIVHSAVGAISESDISLAAASNAIIIGFNVRPTGLAREQAAQEEVDIRLSIIYKVIE 832
23 -15.000[R] KOG2486 Predicted GTPase  ali follow..  15  137........................................................................................................................................................................EFALVGRSNVGKSSLLNSLVRRKRLA-----------------------------LTSKKPGKTQCI---NHFRINDKWYLVDLPGYNKFTKDYFLNRSTLVSVFLLVDASIPVKPIDLEYASWLGQNQV--------PMTLIFTKCDKRKKKKNGGKKPEANIKEFQDLIQGFFETTPWIMTSSVTNQGRDE---------------ILLHMAQL................................................................................................................................................................................................................................... 311
24 -14.500[R] COG3596 Predicted GTPase  ali follow..  12  36....................................................................................................................................................................HYEPVIGIMGKTGAGKSSLCNALFAGEVSPVSDV------------------------------AACTRDPLRFRLQIGEHFMTIVDLPGDTEYAALYREQLPRLDLILWLIKADDRALATDEHFYRQVIGEAY-------HKMLFVISQSDKAEPTSGGNILSTEQKQNISRKICLLHELFPVCAVSVRLQWGL---------------RVMAERMIKCLPREPSSPVVALLQHPFR................................................................................................................................................................................................................. 233
25 -14.100[R] COG1160 Predicted GTPases  ali follow..  13  6.........................................................................................................................................................................VALVGRPNVGKSTLFNRLTRTRDALVADF------------------------------PGLTRDRKYGHAHIAGYDFIVIDTGGEEKMAEQSLLAIDEADIVLFLVDARAGLTAADIGIANYLRQRQ--------KITVVVANKTDGIDADSHCAE---------FYQLGLGE-----EQIAASQGRGVTQ---------------LMEQVLAPFAEKMENADENDRTSEEEQDEWE--EEEQDKNIKIAIVGRPNVGKSTLTNRIL----------DRVVVFDMPGTTRDSIYIPMERDGQQYTLDTAGVRKRGKVHLAVEKFSVIKTLQAIQDANVVLLTIDARENISDQDLSLLGFILNAGRSLV--VVNKWDGLDQDVKDRVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSIKEAYACATQKMTTSLLTRILQ 402
26 -13.700[R] COG1084 Predicted GTPase  ali follow..  19  147.......................................................................................................................................................FAKNKLRNMPTVDLDAFTVVIAGFPNVGKSTLLRTLTGAEPEVAD---------------------------------FTTKGIQIGHLERKWKRIQVIDTPGLLDELQAMVALENIADVIMFIFDASETCGYTLESQYSLYLGIRSVFD----IPVVTVFNKMDLAE-NVKYLEEYINMVEDP-------------LKVSAFEGRGVSK.......................................................................................................................................................................................................................................................... 316
27 -12.400[R] COG1159 GTPase  ali follow..  20  11.........................................................................................................................................................................IAIVGRPNVGKSTLLNKLLGQKISITSRKAQ----------------------TTRHRIVGI--------HTEGPYQAIYVDTPGNRLMNKAASSSIGDVELVIFVVEGTR-----------WTPDDEMVLNKL--APVILAVNKVDNVQ---------KVDLLPHLQFLASQMNFLDIVPISAETGMNV---------------DTIAGIVKHLPEAIHHFPEDYITDRSQRFMASEIIR---------------EKLMRFLGAEL---PYSVTVEIERFVTNERGGYDINGLILVEREGQKKMVI----------NKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKSGWA....................................................................................... 286
28 -12.300[U] KOG0090 Signal recognition particle receptor, beta subunit (small G protein superfamily)  ali follow..  15  51..................................................................................................................................................................RRTKSNTVLLSGLSGSGKTVLFYQLR--DGSSHQGAVTSMEPNEGT----------------------FVLHNENNTKKGKVKPVHLIDVPGHSRLISKLEEYLPRAAAVVFVVDAL--EFLPNIRAASEYLYDILTNASVIKNKVLLCCNKTDKVTAHTK--EFIRKQMEKEIDKL................................................................................................................................................................................................................................................................................ 201
29 -12.200[O] KOG0448 Mitofusin 1 GTPase, involved in mitochondrila biogenesis  ali follow..  16  72...................................................................................................................................................................SRRHMKVAFFGRTSSGKSSVINAMLVEGTDGDKAYLMTEGSDEKKSVKTVNQLAHALHM-DKDLKAGCLVRVFWPKAKCARDDLVLVDSPGLDSWIDKFC---LDADVFVLVANSESMNTEKHFFHK--------VNEWLSKPNIFILNNRWDASAVRRQHMERCLHFLVEELKVANALEAQNRIFFVSAKEV............................................................................................................................................................................................................................................................... 288
30 -11.900[R] COG2229 Predicted GTPase  ali follow..  13  2.....................................................................................................................................................................RENKIIFTGPVGVGKTTAIAAI-------SDEALVQTDASASDM------------TLDRKRNTTVAMDYGAISLD-EDTKVHLYGTPGQERFNFMWEILSQGSMGLVLLLDNARTNPLKDLEF-------HSFRGLLEKAPVVVGITKMDIRS---------QPGIDVYHKYLAKHNLNVPVFEIDARKEDDVKQ.......................................................................................................................................................................................................................................................... 163
31 -11.600[R] KOG1673 Ras GTPases  ali follow..  14  1..................................................................MAEKVHEIAGKITPFCRKIVHVNRKWRIIERVSIFGDFFRFLWRKIVSCSSIIEKPILYRRIVHKISSTAGDIFDGDDDTTTEPTVSGRRFGSSSDSDLVSLKISLLGDCQTGKTTFVVKYVGDENQSFLEMT------------------------------GLNLMDKTFYVQGVTISFSIWDVGGDEKRSKDHIPIACKDAVAILFM-TSRSTLNSVFGWYSQARKWN----------PILIGTKFDDVRLPPNLQWTIVTQARAYAKVMN-----ASLFFSSATHNINVNK.......................................................................................................................................................................................................................................................... 257
32 -11.600[R] KOG0074 GTP-binding ADP-ribosylation factor-like protein ARL3  ali follow..  20  14...................................................................................................................................................................PDQEVRILLLGLDNAGKTTLLKQL----------------------------------ASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSAD---RKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLT---------ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQD.......................................................................................................................................................................................................................................................... 168
33 -11.300[R] KOG0075 GTP-binding ADP-ribosylation factor-like protein  ali follow..  12  18....................................................................................................................................................................KEEMELTLVGLQFSGKTTFVNVI--ASGQFAEDMIP-------------------------------TVGFNMRKITRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAAD---LDKLEASRNELHSLLDKPQLAGIPVLVLGNKRDLPG---------ETGLIERMNLSSIQDREICCYSISCKEKDNIDI.......................................................................................................................................................................................................................................................... 172
34 -11.300[UZ] KOG0073 GTP-binding ADP-ribosylation factor-like protein ARL2  ali follow..  16  13...................................................................................................................................................................KERELRLLMLGLDNAGKTTILKKF----------------------------------NGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD---RQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG---------SNAIREALELDSIRSHHWCIQGCSAVTGENLLP.......................................................................................................................................................................................................................................................... 167
35 -11.200[U] KOG0071 GTP-binding ADP-ribosylation factor Arf6 (dArf3)  ali follow..  17  18...................................................................................................................................................................SNKEMRILMLGLDAAGKTTILYKL----------------------------------KLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSAD---SNRISEARQELHRIISDREMRDCLLLVLANKQDLPG---------PAQITDVLQLDKLKDRLWNVQPTCALTGDGLLE.......................................................................................................................................................................................................................................................... 172
36 -11.200[R] KOG0394 Ras-related GTPase  ali follow..  20  3.................................................................................................................................................................SRRRTLLKVIILGDSGVGKTSLMNQ-------------------------------YVNKKFSNQYKATIGADFLTKEVQFEDRLFTL-DTAGQERFQSLGVAFYRGADCCVLVYDNSMKSFENLNNWREEFLIQASPSDPENFPFVLIG-NKVDVDDGNSRVVSE--KKAKAWCASKG----NIPYFETSAKVGTNVEE.......................................................................................................................................................................................................................................................... 167
37 -11.200[U] KOG0072 GTP-binding ADP-ribosylation factor-like protein ARL1  ali follow..  20  14...................................................................................................................................................................GSREMRILILGLDGAGKTTILYRL----------------------------------QVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSAD---RDRIGISKDELLYMLREEELAGAILVVLANKQDMDG---------VAEVHHALGLENLKNRTFQIFKTSATKGEGLDQ.......................................................................................................................................................................................................................................................... 168
38 -11.100[R] COG1100 GTPase SAR1 and related small G proteins  ali follow..  20  6..........................................................................................................................................................SSMFDKLWGSNKELRILILGLDGAGKTTILYRL----------------------------------QIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD---KDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG---------ASEVSKELNLVELKDRSWSIVASSAIKGEGITE.......................................................................................................................................................................................................................................................... 169
39 -11.100[R] KOG0395 Ras-related GTPase  ali follow..  17  2.....................................................................................................................................................MKTLSSGNCTLSVPAKNSYRMVVLGASRVGKSSIVSRFL----------------------NGRFEDQY--PTIEDFHRKVYNIR--------DMYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDN---RESFDEVKRLQKQILEVKSCLKNKMVICGNKNDHGELCRQVPTTEAELLVS-------GDENCAYFEVSAKKNTNVDE.......................................................................................................................................................................................................................................................... 181
40 -11.000[U] KOG0070 GTP-binding ADP-ribosylation factor Arf1  ali follow..  19  14...................................................................................................................................................................AKKEMRILMVGLDAAGKTTILYKL----------------------------------KLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN---------AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE.......................................................................................................................................................................................................................................................... 168
41 -11.000[TU] KOG1954 Endocytosis/signaling protein EHD1  ali follow..  15  1.........................................................................MYNFFRTVPRANRNEITFYPDYEEEGQKKKKTRSMFSWLGGDSSKKKNKEVLETVSEGLRKIYKQKLLPLEEFHKFHDFHSPALDDPDFDAKPM--ILLVGQYSTGKTTFIRYLL------------ESDFPGIRIGPEP-RFIAVMHGDEEGSIPGNAL--ALSGFGNA-ESVTIVDTPG--DFTGVLEWFAERVDRIILLFDAHK----------DISDEFKRCIEAL--DKIRIVLNKSDMVDHQQRVYGALMWSLGKVFKT................................................................................................................................................................................................................................................................................. 280
42 -11.000[R] KOG1533 Predicted GTPase  ali follow..  12  2.......................................................................................................................................QMNLNEKKQLLRVRVYATSEKGENLGSTHWTMYGVLVIGAPGAGKSTFCAGLTDIFSQTKRPNLDPANDTMAYAPDVNITEMITVNDVMDRLGLG-NCNWLLQKIEANHKKYLIIDCPGQLELVIRFLEKSGVRLCALHLADSLYCSDPSKFISVALSTLATMV--TMEMPQVNC-LSKADLFS-NEVPGLEKYRKLNEAICGVISDFDLVSFVPLAVENKESMMK---------------VIQMVDAA................................................................................................................................................................................................................................... 280
43 -11.000[U] KOG0076 GTP-binding ADP-ribosylation factor-like protein yARL3  ali follow..  19  14...................................................................................................................................................................KKEQYSILILGLDNAGKTTFLETLKKEYSLAFKALEKIQP----------------------------TVGQNVATIPVDSQILKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSD---RERLDECSTTLQSVVMDEEIEGVPILMLANKQDRQDRMEV--QDIKEVFN--KIAEHISARDSRVLPISALTGEGVKD.......................................................................................................................................................................................................................................................... 177
44 -10.900[R] KOG1489 Predicted GTP-binding protein (ODN superfamily)  ali follow..  19  337....................................................................................................................................................................KSIADLGLIGLPNAGKSTILNKISNAKPKIGHWQFTTLSP-----------------------------TIGTVSLGFGQDVFTVADIPG-------IIQGASRSNGWVFVLDLSNKNPLNDLQL---LIEEVGTLEKVKTKNILIVCNKVDIDA-EKSESFAKYLQVEKFSKS-----QEWDCVPISALREKT............................................................................................................................................................................................................................................................. 499
45 -10.700[R] COG0218 Predicted GTPase  ali follow..  16  27........................................................................................................................................................................EIALAGRSNVGKSSFINTMLNR---------KNLARTSGKPGKTQLLNFFNIDD-----------------------KMRFVDVPGYGCMIEEYLTTRENLRAVVSLVDLRHDPSADDVQMYEFLKYYEI--------PVIIVATKADKI--PRGKWNKHESAIKKKLNF----DPSDDFILFSSVSKAGMDE.......................................................................................................................................................................................................................................................... 186
46 -10.500[U] KOG0096 GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily  ali follow..  18  2............................................................................................................................................................SAPAANGEVPTFKLVLVGDGGTGKTTFVKR-------------------------------HLTGEFEKKYIATIGVEVHPLSFYTNFGKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTS---RITYKNVPNWHRD--LVRVCENIPIVLCGNKVDVKE------RKVKAKTITFHRK-----KNLQYYDISAKSNYNFEK.......................................................................................................................................................................................................................................................... 161
47 -10.300[OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase  ali follow..  15  2....................................................................................................................................................................KRPLIIGVGGPVGAGKTMLIERL-----------TRYLSTKGYSMAAITNDIYTKEDARILLNTSVLPADIEEMCDKHPDLQLLFLESGG--------TFSPDLVDFSIYIIDVAQGE---------PRKGGQGMIKS------LFIINKVDLAPYVGANVEVMKADTLKS-------RGNKDFFVTNLKTDEGLKS.......................................................................................................................................................................................................................................................... 190
48 -10.200[U] KOG0077 Vesicle coat complex COPII, GTPase subunit SAR1  ali follow..  16  18....................................................................................................................................................................QKEAKILFLGLDNAGKTTLLHML----------------------------------KDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYD---KERFAESKRELDALLSDEALATVPFLILGNKIDIPYAASE--DELRYHLKGKVTLGDSGVRPLEVFMCSIVRKMGYGE.......................................................................................................................................................................................................................................................... 183
49 -10.100[R] KOG1490 GTP-binding protein CRFG/NOG1 (ODN superfamily)  ali follow..  15  152......................................................................................................................................................EQIRQHMARLPSIDPNTRTVLICGYPNVGKSSFMNKVTRADVDV-----------------QPYAFT--------------TKSLFVGHTDYKYLRYQVIDTPG-------ILDRPFERAAVLFFLDISG---SCGYTIAQQAALFHSIKSLFMNKPLVIVCNKTDLMP------ENISEEDRKLIEEMK-ASEEQVLLKMSTLTDEGVMS.......................................................................................................................................................................................................................................................... 340
50 -10.100[U] KOG0094 GTPase Rab6/YPT6/Ryh1, small G protein superfamily  ali follow..  20  10.......................................................................................................................................................................YKLVFLGDQSVGKTSIITRFMYDK------------------------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAN---RLSFLNTSKWIEEVRNERAGDVIIVLVG-NKTDLVEKRQVSIEEGDSKGREY---------GVMFIETSAKAGFNIKP.......................................................................................................................................................................................................................................................... 161
51 -9.980[T] KOG4252 GTP-binding protein  ali follow..  15  10.......................................................................................................................................................................IKMVVVGNGAVGKSSMIQR-------------------------------YCKGIFTKDYKKTIGVDFLERQIQVNDERLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTDRGSFEAVSSWREKVVAEV----------TVLVQNKIDLLDDSCIKNEEAEA-----------KRLRLRFYRTSVKEDLNVNE.......................................................................................................................................................................................................................................................... 160
52 -9.910[K] KOG1534 Putative transcription factor FET5  ali follow..  15  4.......................................................................................................................................................................VAAFVCGVASSGKSTFCGALMSYMKSVGRSNLDPAAENFEWEPTVDIRDLISIDDVMEELDYGENLDWLNEEIGDYDEDYLIFDMPGQIELIRHLQVTLNFRPCAVYLLESQFLVDRTKFFAGVLSAMSAMV--MMEVPHINL-LSKMDLLK-INETTNPKFHELNRCIVQLIDDFNMVNFLPLESGNEESVSR---------------VLSYIDDA................................................................................................................................................................................................................................... 252
53 -9.600[R] KOG0091 GTPase Rab39, small G protein superfamily  ali follow..  15  10.......................................................................................................................................................................FRLILIGDSTVGKSSLLKF-------------------------------FTDGKFAELSDPTVGVDFFARLIEMKD-KLQLWDTAGQERFRSITKSYYRNSVGVLLVYDISN---HASFEHIPLWMMEAQRHIEPHRPVFALVGCKLDLINAGGHR----TEEAQKFAKQHG-----LHFVETSARSGANVEE.......................................................................................................................................................................................................................................................... 166
54 -9.590[P] COG0370 Fe2+ transport system protein B  ali follow..  21  1....................................................................................................................................................................MSQNTYCILGNPNTGKTSLFNALTGSYEYVGN---------------------------------GVTVEKKVGTLR--SKTGKLIDLPGDETVVTRFLLE-EKFDCMLNIVDSSQ--IERNLNLTVQLLE-------YGAP-VVMGLNMIDVAA------RGIHLNIQNLAKKLR-----IPILPVVARSGKGTED.......................................................................................................................................................................................................................................................... 152
55 -9.560[U] KOG0092 GTPase Rab5/YPT51 and related small G protein superfamily GTPases  ali follow..  21  21.......................................................................................................................................................................FKLVLLGESAVGKSSLVLRFVKGQ------------------------------HEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDTNEESFARAKNWVKELQRQA--------PNIVIALNKADLANKRAVDFQEAQS-----------DDNSLLFMETSAKTSMNVNE.......................................................................................................................................................................................................................................................... 172
56 -9.480[T] KOG3886 GTP-binding protein  ali follow..  11  2................................................................................................................................EESDSEKTTEKENLGPRMDPPLGEPEGSLGWVLPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATILDRIHSLQINSSLS----SLVDSVGNTKTFDVEHSHVRFLGNVLNLWDCGGQDTFMENYFTSQRDVEVLIYVFDVESRELEKDMHYYQSCLEAILQNS-----KIFCLVHKMDLV--QEDQRDLIFKEREEDLRRL--SRPLECSCFRTSIWDETLYKAWSSI--------YQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFESNIIKQ-QSMEVRNSNFAAFIDIFTSNTYVMVVVSDPSIPSAATLINIRNARKHFEKL............................................................................................................................... 361
57 -9.470[U] KOG0086 GTPase Rab4, small G protein superfamily  ali follow..  19  9.......................................................................................................................................................................FKFLVIGSAGTGKSCLLHQ-------------------------------FIENKFKQDSNHTIGVEFGSRVVNVGGKKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS---RETYNSLAAWLTDARTLASPNIVVILCG-NKKDLDPEREVTFLEASR-----------QENELMFLETSALTGENVEE.......................................................................................................................................................................................................................................................... 160
58 -9.440[U] KOG0097 GTPase Rab14, small G protein superfamily  ali follow..  17  12.......................................................................................................................................................................FKYIIIGDMGVGKSCLLHQ-------------------------------FTEKKFMADCPHTIGVEFGTRIIEVSGQKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR---RSTYNHLSSWLTDARNLTNPNTVIILIG-NKADLEAQRDVTYEEAKQ-----------EENGLLFLEASAKTGENVED.......................................................................................................................................................................................................................................................... 163
59 -9.420[U] KOG0098 GTPase Rab2, small G protein superfamily  ali follow..  17  7.......................................................................................................................................................................FKYIIIGDTGVGKSCLLLQ-------------------------------FTDKRFQPVHDLTIGVEFGARMVTIDGKKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR---RDTFNHLTSWLEDARQHSNSNMVIMLIG-NKSDLEARREVKREEGEA-----------REHGLVFMETSAKTAANVEE.......................................................................................................................................................................................................................................................... 158
60 -9.370[U] KOG0087 GTPase Rab11/YPT3, small G protein superfamily  ali follow..  19  11.......................................................................................................................................................................FKTVLIGDSGVGKSNLLMR-------------------------------FTRNEFNIESKSTIGVEFATRNIVLDNKKAQIWDTAGQERYRAITSAYYRGAVGALIVYDTKQSSFDNVGRWLKELREHA------NIVIMLVG-NKTDLLHLRAVSTEEAQA-----------AENNLSFIETSAMDASNVEE.......................................................................................................................................................................................................................................................... 162
61 -9.360[R] KOG0083 GTPase Rab26/Rab37, small G protein superfamily  ali follow..  12  399.................................................................................................SATEQQPLLDSGGGVSATAVARPPVAPAPVAPGPGSEGASATLCKNAGRALIRMISSSKAPEEEDEFDIMGKVIMLGDSGVGKTSLLIRFR----------------------DGRYVPSYFLSTV------GIDFRNKVVVVDGTRVKLQIWDTAGQERF--RSVTHARDAHALLLLYDVTN---KTTYD---NIRAWLGEIREYAQEDVVIVLNKADCSGSERQVKREDGERLG--------REHNVPFMETSAKTGLNVEL.......................................................................................................................................................................................................................................................... 622
62 -9.280[DTZ] KOG1547 Septin CDC10 and related P-loop GTPases  ali follow..  14  192..............................................................................NSEPAPVSQLQSRLEPKPQPPVAEATPRSQEATEAAPSCVGDMADTPRDAGLKQAPASRNEKAPVDFGYVGIDSILEQMRRKAMKQGFEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERIPKTIE--------IKSITHDIEEKGVRM------------KLTVIDTPGFGDHINN----ENCWQPIMKFINDQYEKYEVNINRKKRTRVHCCLLRPLDIENIVPVIAKADTL--TLEERVHFKQRITADLLSNGIDVYPQEMIPFAVVGSDHEYQVNGKRRKTKW--GTIEVE........................................................................................................................................................................................................................................ 508
63 -9.270[R] KOG0088 GTPase Rab21, small G protein superfamily  ali follow..  17  13.......................................................................................................................................................................FKIVLLGEGCVGKSSLVLRFVENK------------------------------SCKHLSTIQASFQNKTVNVEDCQADLHIWDTAGQEKYHALGPIYYRGSNGVLLVFDITD---RKSFEKVKNWVLEIKTCLGNTAEILIVG-NKIDLEEERQVTRQDAEA----YAESEG-----ALYMETSAQDNVGISD.......................................................................................................................................................................................................................................................... 164
64 -9.120[J] KOG1191 Mitochondrial GTPase  ali follow..  17  351....................................................................................................................................................................QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEV------------------------------AGTTRDVVEANVTVRGVPITLLDTAGIRE-VERSETAAKVADVIIMAVSAVEGWTEEDTELLRKIQSDKVGVSFYDLQPMILVMNKIDCAP---------PGSCDQLEDQRKKEEVFHKSVFTSAVTGQGIEE.......................................................................................................................................................................................................................................................... 524
65 -9.090[A] KOG0923 mRNA splicing factor ATP-dependent RNA helicase  ali follow..  11  107.........LDDEYLFDESVLTKREKEEREYKKQLLNIAKEHEKARELERIQRYNMPQDLKKGERSEYVEVDEFEKQPNSEQKKWEAEQLASARFHFGAKDAKAEEEYELLLDDQIDFIQALTLDGSREKSSSRQPELTEKERKRLTLDETRRSLPVYPFKEDLIAAVKLIIEGETGSGKTTQVPQYLVEAGFTKDKAMSVAARVAEEMGGNEVGYSIRFEDCTSDRTIGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGRFRPELKLLISSATLDAEKFSFRIPGRREADYIDACCVSVLQIHATQPLGDILVFGQDEIETCQEVLHDRVKRLGSKIRELIVIPVYAILATNIAETSLTI--------DNIIYVIDPGFAKQNNFNSRTGME---SLMVVPISKASANQRAGR--AGRTAPGKFRLYTAWAYKHELEDNTVPEIQRINLG----------------NAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTK-GKMLLASEKYKCSEEMVTIAAMLSVNSAIFYRPKDKIIHADTARKNFNHMHGDHLSLLQVYNQWAETDY.................... 746
66 -9.010[U] KOG0095 GTPase Rab30, small G protein superfamily  ali follow..  18  10.......................................................................................................................................................................FKIVLIGNAGVGKTCLVRRFTQGL------------------------------PPGQGATIGVGFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC---EESFRCLPEWLREIEQYASNKVITVLVG-NKIDLAERREVSQQRAEE-----------EAQDMYYLETSAKESDNVEK.......................................................................................................................................................................................................................................................... 161
67 -9.000[U] KOG0093 GTPase Rab3, small G protein superfamily  ali follow..  16  23.......................................................................................................................................................................FKILIIGNSSVGKTSFLFR-------------------------------YADDSFTPAFVSTVGIDFKVKTIYRNDKKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN---EESFNAVQDWSTQIKTYSWDNAQVLLVG-NKCDMEDERVVSSER-----RQLADHLG-----FEFFEASAKDNINVKQ.......................................................................................................................................................................................................................................................... 174
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35