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Query: [P] KOG0501 K+-channel KCNQ, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTMAGGRRGLVAPQNTFLENIVRRSNDTNFVLGNAQIVDWPIVYSNDGFCKLSGYHRAEVMQKSSTCSFMYGELTDKDTIEKVRQTFENYEMNSFEILMYKKNRTPVWFFVKIAPIRNEQDKVVLFLCTFSDITAFKQPIEDDSCKGWGKFARLTRALTSSRGVLQQLAPSVQKGENVHKHSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCVFKTTWDWIILILTFYTAILVPYNVSFKTRQNNVAWLVVDSIVDVIFLVDIVLNFHTTFVGPAGEVISDPKLIRMNYLKTWFVIDLLSCLPYDVINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYIEYGAAVLVLLVCVFGLAAHWMACIWYSIGDYEIFDEDTKTIRNNSWLYQLAMDIGTPYQFNGSGSGKWEGGPSKNSVYISSLYFTMTSLTSVGFGNIAPSTDIEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVPKGLSERVMDYIVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKRIVFRKISDVKREEEERMKRKNEAPLILPPDHPVRRLFQRFRQQKEARLAAERGGRDLDDLDVEKGNVLTEHASANHSLVKASVVTVRESPATPVSFQAASTSGVPDHAKLQAPGSECLGPKGGGGDCAKRKSWARFKDACGKSEDWNKVSKAESMETLPERTKASGEATLKKTDSCDSGITKSDLRLDNVGEARSPQDRSPILAEVKHSFYPIPEQTLQATVLEVRHELKEDIKALNAKMTNIEKQLSEILRILTSRRSSQSPQELFEISRPQSPESERDIFGASLast
1 -212.000[P] KOG0501 K+-channel KCNQ  ali  100  1MTMAGGRRGLVAPQNTFLENIVRRSNDTNFVLGNAQIVDWPIVYSNDGFCKLSGYHRAEVMQKSSTCSFMYGELTDKDTIEKVRQTFENYEMNSFEILMYKKNRTPVWFFVKIAPIRNEQDKVVLFLCTFSDITAFKQPIEDDSCKGWGKFARLTRALTSSRGVLQQLAPSVQKGENVHKHSRLAEVLQLGSDILPQYKQEAPKTPPHIILHYCVFKTTWDWIILILTFYTAILVPYNVSFKTRQNNVAWLVVDSIVDVIFLVDIVLNFHTTFVGPAGEVISDPKLIRMNYLKTWFVIDLLSCLPYDVINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYIEYGAAVLVLLVCVFGLAAHWMACIWYSIGDYEIFDEDTKTIRNNSWLYQLAMDIGTPYQFNGSGSGKWEGGPSKNSVYISSLYFTMTSLTSVGFGNIAPSTDIEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVPKGLSERVMDYIVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKRIVFRKISDVKREEEERMKRKNEAPLILPPDHPVRRLFQRFRQQKEARLAAERGGRDLDDLDVEKGNVLTEHASANHSLVKASVVTVRESPATPVSFQAASTSGVPDHAKLQAPGSECLGPKGGGGDCAKRKSWARFKDACGKSEDWNKVSKAESMETLPERTKASGEATLKKTDSCDSGITKSDLRLDNVGEARSPQDRSPILAEVKHSFYPIPEQTLQATVLEVRHELKEDIKALNAKMTNIEKQLSEILRILTSRRSSQSPQELFEISRPQSPESERDIFGAS 962
2 -120.000[PT] KOG0500 Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins  ali follow..  19  68....................................................................................................................QGIARLSRLIFLLRRWAARHVHHQDQGPDSFPDRFRGAELKEVSSQESNAQANVGSQEPADRGRSAWPLAKCNTNTSNNTEEEKKTKKKDAIVVDPSSNLYYRWLTAIALPVFYNWYLLICRACFLQSEYLMLWLVLDYSADVLYVLDVLVRARTGFL-EQGLMVSDTNRLWQHYKTTQFKLDVLSLVPTDLAYLKVGTN---YPEVRFNRLLKFSRLFEFFDRTETRTNYNMFRIGNLVLYILIIIHWNACIYFAISKFIGFGTDSWVYPNIS----------------------IPEHGRLSRKYIYSLYWSTLTLTTIGETPP-PVKDEEYLFVVVDFLVGVLIFATIVGNVGSMISNMNASRAEFQAKIDSIKQYMQFRKVTKDLETRVIRWFDYLWANKKTVDEKEVLKSLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGKEMYIINEGKLAVVADDTQFVVLSDGSYFGEISILNKSGNRRTANIRSIGYSDLFCLSKDDLMEALTEYPEAKKALEEKGRQILMKDNLIDEELARAGADPKDLEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQVKGGGDKPLADGEVPGDATKTEDKQ........................................................................................................................................................................................................... 693
3 -115.000[PT] KOG0499 Cyclic nucleotide-gated cation channel CNCG4  ali follow..  14  137.......................................................................................................................................KRMRQRTALYKKKLVEGDLSSPEASPQTAKPTAVPPVKESDDKPTEHYYRLLWFKVKKMPLTEYLKRIKLPNSIDSYTDRLYLLWLLLVTLAYNWNCWFIPLRLVFQTADNIHYWLIADIICDIIYLYDMLFIQPRLQFVRGGDIIVDSNELRKHYRTSKFQLDVASIIPFDICYLFFG----FNPMFRANRMLKYTSFFEFNHHLESIMDKAIYRVIRTTGYLLFILHINACVYYWASNYEGIGTTRWVY------------------------------DGEGNEYLRCYYWAVRTLITIG-GLPEPQTLFEIVFQLLNFFSGVFVFSSLIGQMRDVIGAATANQNYFRACMDDTIAYMNNYSIPKLVQKRVRTWYEYTWDSQRMLDESDLLKTLPTTVQLALAIDVNFSIISKVDLFKGCDTQMIYDMLLRLKSVLYLPGDFVCKKGEIGKEMYIIKHGEVQVLGGPKVLVTLKAGSVFGEISLLAGGGNRRTANVVAHGFANLLTLDKKTLQEILVHYPDSERILMKKARVLLKQKAKTAEATPPRKDLALLFPPKEETPKLFKTLLGGTGKASLARLLKLKREQAAQKKENSEGGEEEGKENEDKQKENEDKQKENEDKGKENEDKDKGREPEEKPLDRPECTASPIAVEEEPHSVRRTVLPRGTSRQSLIISMAPSAEGGEEVLTIEVKEKAK................................................................................................................................ 808
4 -95.400[PT] KOG0498 K+-channel ERG and related proteins, contain PAS/PAC sensor domain  ali follow..  18  2..............................................................................................................................................AFSHDNRVRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKDPDHKETSSVTRKNIINPQDSFLQNWNKIFLFACVVALAIDPLFFYILDSKLEIAASLLRTLIDAFYIIHIVFQFRTAYIAPSGELVDDAKAIALKYLSSYFIIDLLSILPLPQIVVLAVIPS-LKFSIIAQYVPRILRMYPLYTEVTRVTETAWAGAAWNLSLYMLASHVFGALWYLISVERRNVSNNFLTTSCPFLDPGDITNSTIFNFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKFVGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNFNAVNLKASDFCGEDLLPSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQLQHTFRFYSVQWRT---SVSFIQAAWRRYCRRKLAKSLRDEEDRLREALASQDKEHNAATVSSSLSLGGALYASRFASNALHNLRHNISNLPPRYTLPLLPQKPTEPDFTANHTTD...................................................................................................................................................................................... 710
5 -18.300[P] KOG4390 Voltage-gated A-type K+ channel KCND  ali follow..  16  8.WLPFARAAAIGWMPV--ALIVLNVSGTRFQTWQDTLERYP--YFFD-FRHILNFYRTGKLHYPRHCISAYDE----------------------ELAFFGLIPEII-----------------------GDCCYEEYKDRRRENAERLQDDADTDTAGESALPTMTARQRVWRAFENPHTSTMALVFYYVTGFF---------------------------IAVSVIANVVETVP-KELPCGERYAVAFFCLDTACVMIFTVEYLLRLAAA---------------RYRFVRSVMIIDVVAILPY-YIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHLGYTLKSCASELGFLLFSLTMAIIIFATVMFYA--------------------------------------EKGSSASKFTSIPAAFWYTIVTMTTLGYGDMVPKTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQKKARLARIRAAKS.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 438
6 -17.300[P] KOG3713 Voltage-gated K+ channel KCNB/KCNC  ali follow..  12  23..................IEIVVNVGGVRQVLYGDLLSQYP----ETRLAELINCLAGGYDTIFSLCDD-YDPGKREFYFDRDPDAFKC-------IEVYYFGEVHMKKGICPICFKNE---MDFWKVDLKFLDD------------------------------SHLSEKREELEEIARRVQLILDDLGVDAAEGRWRRCQKCVWKFLEKPESSCPARVVAVLSFLLILVSSVVMCMGTIPNRVEHPTLENVETACIGWFTLEYLLRLFSS---------------KLHFALSFMIVDVLAILPFYVSLTLMMELTNVQQAVQALRIMRIARIFKLARHLTYALKRSFKELGLLLMYLAVGIFVFSALGYTM--------------------------------------EQSHPETLFKSIPQSFWWAIITMTTVGYGDIYPKTTLGKLNAAISFLCGVIAIALPIHPIINNFVRYYNKQRVLETAAKHELELMELNS.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 434
7 -14.900[T] KOG1113 cAMP-dependent protein kinase types I and II, regulatory subunit  ali follow..  10  100.......................................................................................................................................................................................................................................................................................................................................................................................................................................VCAETYNPDEEEEDTDPRVIHPKTDEQRCRLQEACKDILLFKNLVKADEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSVG---------QYDNRGSFGELALMYNTPRAANNAKKRKMFESFIESVPLLKSLEVSERMKIVDVIGEKIYKDGERIITQGEKADSFYIIESGEVSILIRSREIARCHKGQYFGELALVTNK--PRAASAYAVGDVKCLVMDVQAFERLLGPCMDIMKRNISHYEEQL.................................................................................................................................................................................................................................................................................................. 389
8 -14.800[P] KOG3684 Ca2+-activated K+ channel proteins (intermediate/small conductance classes)  ali follow..  9  172...............................................................................................................EIAMSSCKYSGGVMKPLSRLSASRRNLIEAETEGQPLQLFSPSNPPEIVISSREDNHAHQTLLHHPNATHNHQHAGTAASSTTFPKANKRKNQNIGYKLGHRRAPFEKRKRLSDYALIFGMFGIVVMVI-KDSMFSLALKCLISLSTIILLGLIIAYHTREALFVIDNGADDWRIAMTYERILYISLEMLVCAPLAFSYTPSRAEADVDIILSIPMFLRLYLIARVMLLHSKLFTDASSRSI-GTVLLVFSISLWIIAAWTVRACE----------------------------------RYHDQQDVTSNFLGAMWLISITFLSIGYGDMVPHTYCGKGVCLLTGIMGAGCTALVVAVVARKL--------ELTKAEKHVHNFMMDTQLTKRIKNAAANVLRETWLIYKHTKLLK-------KIDHAKVRKHQRKFLQAIHQLR------------SVKMEQRKLSDQANTLVDLSKMQNVMYDLITELNDRSEDLEK------------------------------QIGSLESK-LEHLTASFNSLPLLIADTLRQQQQQLLSAIIEARGVSVAVGTTHTPISDSPIGVSSTSFPTPYTSSSS..................................................................................................................................................................................................................................................... 730
9 -14.500[T] KOG0614 cGMP-dependent protein kinase  ali follow..  16  123......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SAEPTNFENKPATLQHYNKTVGAKQMIRDAVQKNDFLKQLAKEQIIELVNCMYEMRARAGQWVIQEGEPGDRLFVVAEGELQVSREGALLGKMRAGTVMGELAILYNC--TRTASVQALTDVQLWVLDRSVFQMITQRLGMERHSQLMNFLTKVSIFQNLSEDRISKMADVMDQDYYDGGH....................................................................................................................................................................................................................................................................... 301
10 -14.300[P] KOG1418 Tandem pore domain K+ channel  ali follow..  7  154......................................................................................................................................................................................................................................................................................................................................RETWGHWFVRVGKFLYKLLGIQYMLLALMILGYACL----GYIFLTLEYDQQQLDLEVEKQ----LAENLLKYLKQWNCGQSNENRCLELITKAFIERSIKVERDIRGEGWRYGNLACKTNLGRVATIIYGLIGIPLMLFVLKIFGEHSIKW---QKVRYSIRRCVKRCFRRSKLKRASTIESVASDEMPCEESGISEDEEQITTFPVKWALFIVFFF---MVVCSLIVSFWEKDFLTAFFVSLSTIGF--GDVIPEHPRTACGNGLLEIKICYIGALKMSGDAVNFPRFLNT--------IQLTEKFQLYLISALFVLYFVGLALFSMVYAILQERVENQYMWALELIDQEYQENQKQDPDDHLEIPTILPENAAGMEGWTNTIGKMVSQNPVRWRAKNSAYSMENMPDRPISERRFSVLSPGEAPQAPPPVLGTFMLHSLSVKKKLLARSESILNRTGSPWPHAAEMNRPKEATRLGEPSALRVSAPNLTISGGNRSPSGGALSVITEASDEDTRHFKKHRRPLAKTVSTDGTVSNHGSAESLDQVMDELQLESHDQAVTPKPYRDPTTS---------TRFRKRDETVVSRAEKMPLSPNEVLEEEDEDENGDT................... 757
11 -13.600[P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component  ali follow..  9  5..............................................................................................................................................................................................................................................................................................................................................................LFIRIGVIILCLILLFGQIIYILEPKQFTS------------------------------------------VFEGIWWAVVTVSTVGYGDYVPHTPLGQAAGILLILSGASFVTAYFATLSAAAFSRQHRYIEGKVAYKGRDHIIKTNRLLKDLQLGAPSKVLIDESLTEGPLIENVHFIRGHAADDGTLKRANITEAESVMITADQYKS--LSVLTLLSVKGLNPLAYCIVE-TDRFVTNAERAGANQIIGTSEFISRAMLQHYQ......................................................................................................................................................................................................................................................................................................................................................... 242
12 -10.800[P] KOG4404 Tandem pore domain K+ channel TASK3/THIK-1  ali follow..  10  1........................................................................................................................................................................................................................................................................................................................................MAGRGFSWGPGHLNEDNARFLLLAALIVLYLLG-----AAVFSALELAHERQAKQRWEERLANFSRGHNLSRDELRGEATRAGIRVDNVRPRWDFTGAFYFVGTVVSTIGFGMTTPATVGGKIFLIFYGLVGCSSTILFFNLFLERLITI----------IAYIMKSCHQRQLRRRGALPQESLKDAGQCEVDSLAGWKPSVYYVMLILCTASILI---SCCASAMYTPIEG-------------------------SYFDSLYFC-----------VAFSTIG----FGDLVSSQNAHYESQGLYRFANF--VFILMGVCCIYSL-------NVISILIKQSLNWILRKMDSGCCPQCQRGLLRSRRNVVMPGSVRNRCNISIETDGVAESDTDGRRLSGEMISMKDLLAANKASLAILQKQLSEMANGCPHQTSTLARDNEFSGGVGAFAIMNNRLAETSGDR......................................................................................................................................................................... 408
13 -9.690[S] KOG4611 Uncharacterized conserved protein  ali follow..  10  324...........ENQNTKLKFVAASYDIRGNFLKWQTLEGGVLQLCPDTETRLNAAYS-------------FGTTYQQNCEIPISKILIDFPTPIFYDVYLEYTDENQHQYILAVPVLNLN-------------------LQHNKIFVNQDSNSGKWLLTRRIFLVDAVSGRENDLGTQPRVIRVATQISLSVHLVPNTINGNIYPPLITIA--------YSDIDIKDANSQSVKVSFSVTY-EMDHGEAHVQTDIALGVLGGLAVLASLLKTAKRRIGSPMIDLQTVVK------FLVYYAGDLANVFFIITVGTGLYWLIFFKAQKSVSVLLPMPVQEERFVTYVGCAF-ALKALQFLHKLISQITIDVFFI----------------DW--ERPKGKVLKAVEGEGGVRSATVPVSIWRTYFVAVLTVLFFLEVVGFKNLALMDSSSSL-CILRYAVSAALWLAIG--IIQVVFFAVFYERFIEDKIRQFVDLCSMSNIS--LSHKCFGYYIHGRSVHGHADTN--MEEMNMNLKREAENLCSQRGLTDGQTFEIAISNQMRQHYDRIHETLIRKNGPARLLSSSASTF-FIDHVHKEFIKDKLLLERIDEGYSFSSVLYY--GNEATLLIFDLLFFCVVDLACQNFILASFLTY--LQQEIFRYIRNTVGQKNLASKTLVDQ..................................................................................................................................................................................................................................................................................... 991
14 -9.640[P] KOG3827 Inward rectifier K+ channel  ali follow..  8  33.............................................................................................................................................................................................................................................................................RRRLLHKDGSC--NVYFKHIFGEWGSYVVDIFTTL----------------------------------------VDTKWRHMFVIFSLSYILSWIFGSVFWLIAFHHG---------------------------DLLNDPDITPCVDNVHSFTGAFLFSLETQTTIGYGYVTEECSVAVLMVILQSILSCIINTFIIG----ALAKMATARKRAQTIRFSYFALIGMRDGKLCLMWRIGD-----------FRPNHVVE-----------GTVRAQLLRYTEDSEGRMTMAFKDLKLVNDQIILVTPVTIVHEIDHESPLYALDRKAVAKDNFEILVTFIYTGDSTGTS--HQSRSSYVPREILGHRFNDVYKVNCLQFEGSVEYAPFCSAKQLDWKDQQLHIEKAPPVRESCTSDTKARRRSFSAVAIVSSCENPEETTTSATHEYRETPYQKALLTLNRISVESQM............................................................................................................................................................................................................................... 418
15 -9.330[R] KOG2350 Zn-finger protein joined to JAZF1 (predicted suppressor)  ali follow..  7  498.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RRQKTCLDEFLELDEDEISNQRSYRLYHHTE--TCLPVHPKELDIDSEGESDPLWLRQKTIQMIDEFSDVNEGEKELMK-------------NLHVMRHGFVGDCQLFLDAKGTEIVRKN--MCSLFDYGLIAAETV-------------------------YKTVQKLQGLLSKYAAGQELMQRQREEQLKYWLDVGMHKKQEDPKTLKSPQKPAPPADQASTSSASTSGSGSGSSSMQPPKRMPAHLKRGSAASSPGVQSKGTENGTNGSNSSSSNSKNVAKKSADQPLSTLANTRERRSEYGQKRNVSGSRLAATPASKRKLSSKDVEQAADAPEVLTHSDNAVDVGIIDDECGGFGAVGVMNGVASPVANNSEMDTEAEVEAEPTATKAITIHCQQPVTTPVAAAATANERLPGVAPHRRGPRRADRREEELVASAPGYRCRPSMRGADAGAAAAAAAAPTHPHPHRP..... 948
16 -9.220[O] COG5021 Ubiquitin-protein ligase  ali follow..  11  55..IPILDR------DGLLLKVAEKYK-TRRLLLNTENRF---VYSSDVLMYLLNCPNFTIKLAVMRILAILGERFVIAREKIVAHNIFGDHNLRKKTLKLA-------LSLSSSVMDEDGEHFSLVDLYFDKKKVPQKWRKLRFTHYTSNDFKKSSQQKNNINETQTSIKKVTMTTQELCEHSLQQIFDKGMALLPAESW-------------------FDFSIKASVAK---------AFSDDSGENIDLRNIIIETKLNAIAFVNTIFSPPQVSSKLFELDPYAFNS-------LTDLISLIPKEL---------RTDALFTLECISLKVWCSDIIRNLGGNISHGLLFQILRYIAKTLREEYNVRFFYLISNLADVKPLHESLFAAGLIPTLLEIVSIR-------NCPYKRTLASATHLLETFIDNSETTTEFGFTMLITSVANE---------------------IDFTLAHPETWQPPKYSVVYYSISFRELAYIRSLLKLVLKLLSTDSGDRIRNLIDSPILVSLKKILENTYTLDVVQKVINSEPTIYPVEAGLIPYVIDNFPKLIGPSAELLSLLPDVVSAICLNPEG-LKQVKEKGLINNL---DFL-----------LDADHARILTGGDRSTEYGTDIDELARHYPDLKANIVEALCNVIRKMPSTFRNEREFLFTSPKDQKYFFHRKNEEILTDKEEHE.......................................................................................................................................................................................................................................................... 720
17 -9.030[R] KOG3612 PHD Zn-finger protein  ali follow..  8  8.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QLSYLLKFAIQKMKQFQKPVPQHPDYAEYIFHPMDLEKNAKK---KMYGCTEAFDAKWILHNCGNHKLTQIAKVVIKICEHEMNEIEVCPECYLAALVAKLKGFPFWPAKAL------------DKDGQVDA--------------FFGQ---------HDRAWVPI----NCYLMSKEIPFSVKKTKSIFNSAMQEMEVYVENIRRKFGVFNYSPFRTPYTPNSQYQMLLDPTNPSAGTAKVDKQEKVKLNFDMTASPKILMSKPVLSGGTGRRISLSDMPRSPMSTNSSVHTGSDVEQDAEKKATSSHFSASEESMDFLDKSTASPASTKTGQAGSLSGSPKPFSPQLSAPITTKTDKTSTTGSILNLNLDRSKAEMDLKELSESVQQQSTPVPLISPKRQIRSRFQLNLDKTIESCKAQLGINEISEDVYTAVEHSDSEDSEKSDSSDSEYISDDEQKSKNEPEDTEDKEGCQMDKEPSAVKKKP..... 491
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.