FFAS03 results for KOG0860

Query: [U] KOG0860 Synaptobrevin/VAMP-like protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 .`
#	Score	Template	Links and tools	%id	First	`MSSSTPFDPYALSEHDEERPQNVQSKSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMWYKDLKMKMCLALVIIILLVVIIVPIAVHFSR`	Last
1	-53.800	`[U] KOG0860 Synaptobrevin/VAMP-like protein`	`ali`	100	1	`MSSSTPFDPYALSEHDEERPQNVQSKSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMWYKDLKMKMCLALVIIILLVVIIVPIAVHFSR`	117
2	-45.300	`[U] KOG0859 Synaptobrevin/VAMP-like protein`	`ali follow..`	29	115	`............KEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHGFK.`	218
3	-42.000	`[U] KOG0862 Synaptobrevin/VAMP-like protein SEC22`	`ali follow..`	19	119	`............IQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAVFFIMLIVYVRFWW.........`	214
4	-33.900	`[U] KOG0861 SNARE protein YKT6, synaptobrevin/VAMP syperfamily`	`ali follow..`	21	124	`............LKEASDKFRDPAEADKLLKIQRELDETKIILHKTIDGVLARGEKLDSLVEKSSELSLASKMFYKQAKKTNSCCTL..............................`	198
5	-32.900	`[U] COG5143 Synaptobrevin/VAMP-like protein`	`ali follow..`	22	125	`............LDTYISKYQDPSQADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSESLTASSKMFYKQAKKSNSCCI...............................`	198
6	-10.200	`[U] KOG0812 SNARE protein SED5/Syntaxin 5`	`ali follow..`	15	290	`.......................GRAEALHTVESTIHELSSIFTQLATMVSQQGEIAIRIDQNMENVEGAQSQLARYLNSISSN---RWLMMKIFFVLIAFLMIFLFF.........`	375
7	-10.000	`[U] KOG1666 V-SNARE`	`ali follow..`	11	141	`.......................RATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLLSIIILLELAILGGLV..........`	224
8	-9.920	`[U] COG5325 t-SNARE complex subunit, syntaxin`	`ali follow..`	17	211	`.......................RHERAVAKIAEGIIELAQMFQDLQVLVIEQGALVDRIDFNIEQTQVHAKSAEKELIKAESHQ--GRLRFICFLILLIVALIVILA.........`	296
9	-9.720	`[U] KOG0809 SNARE protein TLG2/Syntaxin 16`	`ali follow..`	16	231	`.......................EREKEIQQVVESVNDLAQIMKDLSALVIDQGTIVDRIDYNIENVATTVEDGLKQLQKAERTQ--GMVKCASVLVILCFIMLLLLI.........`	316
10	-9.570	`[U] KOG3894 SNARE protein Syntaxin 18/UFE1`	`ali follow..`	9	224	`.......................NLLDGARQTETKMVEMSALNHLMATHVLQQAQQIEFLYDQDRNLEAINASVGR.........................................`	279
11	-9.460	`[U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17`	`ali follow..`	18	189	`.......................EREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHIDNTAQGKSHLVRHQRHKDQILLW..............................`	256
12	-9.430	`[U] COG5074 t-SNARE complex subunit, syntaxin`	`ali follow..`	12	195	`.......................ARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQEQGVGHTDKAVKSARKARKNKIRCWLIVFAIIVVVVVVVV.........`	282
13	-9.280	`[U] KOG3385 V-SNARE`	`ali follow..`	9	37	`.......................ENERALEGLQDRVILLKRLSGDINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLFLVIYYLT.........`	121
14	-9.050	`[U] KOG3065 SNAP-25 (synaptosome-associated protein) component of SNARE complex`	`ali follow..`	18	199	`.....................HQKIDSNLDELSMGLGRLKDIALGMQTEIEEQDDILDRLTTKVDKLDVNIKSTERKVRQL....................................`	258

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

Comments and questions to: webmaster